Rhodanobacter thiooxydans: LRK53_11470
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Entry
LRK53_11470 CDS
T08065
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRK53_11470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rth03019
]
LRK53_11470
03009 Ribosome biogenesis [BR:
rth03009
]
LRK53_11470
Enzymes [BR:
rth01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LRK53_11470
Messenger RNA biogenesis [BR:
rth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LRK53_11470
Ribosome biogenesis [BR:
rth03009
]
Prokaryotic type
rRNA processing factors
LRK53_11470
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4159
Motif
Other DBs
NCBI-ProteinID:
UJJ53601
LinkDB
All DBs
Position
2552385..2555531
Genome browser
AA seq
1048 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQNLYDLDIEIPSREQKKSNIYKGRITRVEASLEACFIEY
GAERHGFLPLKEISREYFTPGLDPHKANIRELIKEGQEVVVQVEKEERGNKGAALTTFIS
LAGRYMVLMPNNPKAGGVSRRIEGEDRQALKEALDHVTVPDDVGLIVRTAGLGRDAEELQ
WDLDYLLTLWKSISEAASKQKAPFLIYQESKLFIRALRDYLRSDIGEILIDDEPLYNDAR
DFMQQVMPNALRKLKLYRDDTPLFTRYQIETQIESAFDRQVRLPSGGSIVIDQTEALTAI
DVNSSKATKGSDIEETAFNTNCEAAVEIARQARIRDAGGLLVIDFIDMDSPKHQREVEDR
LKDALKLDRARVQIGRISRFGLLEMSRQRLRPSLGEATQITCPRCEGHGHIRGVESLSLS
TLRLIEEHAMKDNTGQVLVQAPTSVANFLLNEKRASVVEIELRHKAHVVIVADEKLETPH
IEIQRIREADMGEHSKPSYERLTAVDAVELPKMGQTLGSGEQPAVSGIVPASPAPVREEV
VAPVATAAPVVRRQPAAAPAPAAAPSGGIISRLFGWFHSTEVAAPAPAPKRTDNANDGGG
RNRRDERGNRSGTGSSASSPRQPRREAAQPGSTKPASAQQARGNRQRSNEAQARPAQQPQ
SQTAKADRQPKPTAAVEGNPARAERKPNPAQPSKVERQPRVAADELPAVAPPGDAANEAE
LLLTPPAASSMPEAADNTTDAEGNQSRRRRGRRGGRRRRRHDEVAADGTGVDSTQAQALD
DEDRDETTATADVPIARTEPSLHESSPVVAAGEAAPTIPPVRQPTPAQPNETQAVTPVAT
AASSAVPVATAFNLPPLPPIPESVKSAATMAAADEHELVRVAPVSTPAPMSPATSVAVNS
VDTQVAKADPASAAVITAVATPTTLSRAASDTTSSAVVAVSGEEPVSTAVTPASSTIATP
AATATAPAPTASLVHEASPSTSVVSPVAGMPETPVAAQPAVSLTPPKQGDLLAQSGPQTR
LLPSTEESEAASPQSRGESDAHKSDSNG
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgatcaacgcgactcagcgtgaagagttgcgcgtggccattgtcgat
ggccagaacctctacgacctggacatcgaaatcccttcgcgggagcagaaaaagtccaat
atttacaagggtcgaatcaccagggttgaggcttcactcgaagcctgcttcatcgagtac
ggcgccgagcgccacggtttcctgccactgaaggaaatctcccgcgagtacttcaccccg
ggcctggacccgcacaaggcgaacatccgcgagctgatcaaggaaggtcaggaagtcgtc
gtgcaggtggagaaagaggaacgcggcaacaagggcgccgccctgaccacgttcatcagc
ctggccggccgctacatggtgctgatgccgaacaatccgaaggccggcggcgtctcgcgc
cggatcgagggcgaggaccggcaggcgctgaaggaggcgctggatcacgtcacggtgccc
gacgatgtcggcctgatcgtgcgcaccgccggcctcggccgcgacgccgaagagctgcaa
tgggacctggactacctgctgaccttgtggaagtcgatctccgaagcggccagcaagcag
aaagcgccgttcctgatctaccaggaatcgaagctgttcatccgcgccctgcgcgactac
ctgcgcagcgacattggcgagatcctgatcgacgacgagccgctgtacaacgacgcccgc
gatttcatgcagcaggtgatgcccaacgccctgcgcaagctcaagctgtaccgcgacgac
accccgctgttcactcgctaccagatcgaaacccagatcgagagcgcgttcgaccgccag
gtacgcctgccgtcgggtggttcgatcgtgatcgaccagaccgaagcgctcaccgcgatc
gacgtcaactcatccaaggcgaccaagggcagcgacatcgaggaaacggcgttcaacacc
aattgcgaggccgcggtggaaatcgcccgccaggcgcgcatccgcgacgccggcggcctg
ctggtgatcgacttcatcgacatggacagtccgaagcaccagcgtgaggtggaggatcgc
ctgaaagatgctctgaaactggaccgcgcccgcgtgcagatcggtcgcatctcgcgcttc
ggtctgctcgagatgtcgcgtcagcggttgcgtcccagcctcggcgaagccacccagatc
acctgcccgcgctgcgaaggccacggccatatccgcggcgtggagtcgctgtcgctgtct
accctgcgactgatcgaagaacacgcgatgaaagacaacaccggccaggtgctggtgcag
gcacccaccagtgtcgccaacttcctgctcaacgaaaagcgcgccagcgtggtcgagatc
gagctgcgccacaaggcgcacgtggtgatcgtcgccgacgaaaagctggagacgccgcat
atcgagatccagcgcatccgcgaggcggacatgggcgagcacagcaagcccagctacgag
cgcctcaccgcggtggacgccgtcgaactgccgaagatggggcagaccctgggcagcggc
gagcagcctgcggtaagcggcatcgtgcccgccagcccggcgccagtgcgcgaggaagtc
gttgcgccggtcgccacggcagcgccggttgtccgccgccagccggcggcagcccccgcc
cctgccgctgcacccagcggcggcatcatctcgcgcctgttcggctggttccacagcacg
gaggtggcggcacccgcaccggcaccgaaacgcaccgacaacgccaacgacggcggcggc
cgcaaccgtcgtgacgagcggggtaaccgctccggcaccggttcgagtgcatcgtcgccg
cgccagccgcgacgcgaggccgcccagccaggctcgacgaaacccgcttccgcgcagcag
gcccgcggcaaccgccagcgcagcaacgaggcccaggcgcgccctgcgcaacaaccccag
agccagaccgccaaggcggaccgccagcccaagccgaccgcggcagtcgagggcaacccg
gcgcgcgcagagcgcaagccgaatccggcgcagccgtccaaggtggaacgccaaccgcgt
gtcgccgcagacgagcttcccgccgtcgcaccaccgggtgatgcggcgaacgaagccgaa
ctgctgctgacgccgccggcggcttcatccatgcccgaagccgccgacaacaccacggat
gccgagggcaaccagtcgcgtcgccgccgcggtcgtcgtggcggccgccggcgccggcgt
cacgatgaagtcgccgctgacggcacgggtgtcgacagcacgcaggcccaggcgctcgac
gacgaggatcgcgacgaaaccactgcgaccgcagacgtcccgatcgcgcgcaccgaaccg
tcgttgcatgaatcgtcgccggtggtcgccgctggcgaggcagcaccgaccattccgccg
gtgcgccaaccgacgcctgctcagccgaacgaaacgcaagccgtgacgcctgtcgcgacg
gcagccagcagcgcggtgccggtcgccacggcattcaacctgccgccgctgccgccgatt
ccggagtcggtgaagtccgccgcgacgatggccgcagctgacgaacacgagcttgtcagg
gtcgccccggtaagcacacctgcgccaatgtcgccagccaccagcgtcgcggtgaacagc
gtggatacacaggtcgccaaggccgatcccgcttcggcggctgtcatcaccgccgtggca
acaccgacgacgctcagtcgagcggcctccgacaccacgtcatcagcggtcgtcgcagtg
tcgggtgaagaacccgtttcgacagcggtgaccccggcaagctcgacgatcgccacgccg
gccgcaacggcgacagctccggcaccgaccgcttcacttgtccatgaggccagcccgtcg
acgagcgtggtgtctcccgttgccggcatgcccgaaacgccggttgcagcccagcctgcg
gtttcgctgacgccccccaagcagggcgatctgctggcgcaatcggggcctcagaccaga
ttgcttccatccaccgaggaaagcgaagctgcatcgccacagtcgcgcggcgagtccgac
gcccacaagagcgactcgaacggctga
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