Rhodanobacter thiooxydans: LRK53_12520
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Entry
LRK53_12520 CDS
T08065
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LRK53_12520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rth03000
]
LRK53_12520
03400 DNA repair and recombination proteins [BR:
rth03400
]
LRK53_12520
Enzymes [BR:
rth01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LRK53_12520
Transcription factors [BR:
rth03000
]
Prokaryotic type
Helix-turn-helix
AraC family
LRK53_12520
DNA repair and recombination proteins [BR:
rth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LRK53_12520
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
UJJ53786
LinkDB
All DBs
Position
2772267..2773772
Genome browser
AA seq
501 aa
AA seq
DB search
MKEPPALPAPHVCEQARLSRDARFDGLFFTAVSSTGIYCRPVCPAPTPKRENVHYYANAA
AAEAAGFRPCLRCRPELAPGNEQWQRGDHVVARALKLIEAGALAEQSLDALAARVGIGAR
QLRRLFVERVGAAPISVHTTRRLLFAKQLLTETALPVTEVALASGFRSLRRFNAAFAQAN
RIAPRELRRHPHAAAGTALLLRLGYRPPYDFPRLLAFLRTRALPGVELVDERSYARVFGP
ADAPGWLRLSAWPGGEHALQLQLHCPQPTRLLGVVTTLRRMFDLDANPQAITDTFGRDAV
LGPLVARHPGLRLPGGWDGFEIAVRAILGQQVSVAAARTLATRIVQRWGEPLPAAPLPGL
ERLFPTPAALAQADLREIGLTAARAATVSTMAQALLDGRVDFSAGQSLDAFVSRWVVLPG
IGEWTAHYIAMRALGAPDAFPAADLILRREAATDAVPLSTKALTACANAWRPWRAYAVIH
LWRSASEAPSPARREKPEAIA
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaccgcctgccctgcccgccccgcatgtctgcgaacaggcgcgactcagccgc
gacgcgcgcttcgacgggctgttcttcaccgcggtgagcagcaccggcatctattgccgg
ccggtatgcccggcgccgacaccgaagcgcgagaacgtgcattactacgcgaacgcggct
gccgcggaagcggccggcttccggccgtgcctgcgttgccggccggaactggcgccgggc
aacgaacagtggcagcgcggcgaccatgtggtggcgcgcgcgttgaagctgatcgaggcc
ggcgcgctggcggaacagtcgctggacgcactggccgcacgcgtcggcatcggtgcgcgg
caactgcgccggctgttcgtcgagcgcgtcggcgcagcgccgatcagcgtgcacacgacg
cggcggctgctgttcgcgaaacaactgctgacggaaacggcgctgccggtgacggaagtc
gcgctcgcgtccggcttccgcagcctgcgccgcttcaacgcggcgttcgcgcaggcgaac
cgcatcgcgccgcgcgagctgcgtcggcacccgcacgcagcggccggtacggcgctgctg
ctgcggctcggctaccggccgccgtacgattttccgaggctgctcgcgttcctgcgcacg
cgcgcgctgccgggcgtggaacttgtcgacgagcgcagctatgcgcgcgtgttcggtccg
gcggatgcaccgggctggttgcgcctgagcgcgtggcccggtggcgaacatgcgctgcag
ctgcaactgcattgtccgcagccgacgcggctgctcggcgtggtgacgacgctgcggcgc
atgttcgacctggacgcgaacccgcaggcgatcacggacacgttcggccgcgacgccgtg
ctcggcccgctggtcgcccgccaccccggcctgcgcctgcccggcggctgggacggtttc
gagatcgcggtgcgcgcgatcctcggccagcaagtcagcgtggcggcggcgcgcacgctg
gcgacacgcatcgtgcaacgctggggtgagccgttgccggcggcgccgctgccgggactg
gagcggttgttcccgacgccggcagcgctggcgcaggcggacctgcgcgagatcggcctg
accgcggcgcgcgccgcgacggtcagcaccatggcgcaggcgctgctggacggccgcgtg
gatttcagcgcggggcaatcgctggatgcgttcgtgtcgcgctgggtcgtgctgcccggc
atcggcgaatggacggcgcactacatcgcgatgcgcgcgctgggcgcgccggacgcgttc
ccggcggcggacctgatcctgcgccgcgaggcggcgacggatgctgtgccgctcagcacg
aaagcgctgaccgcgtgtgcgaacgcgtggcgcccgtggcgcgcgtacgccgtcatccat
ctgtggcgcagtgcatcggaagcaccgtcgccggcacgccgggaaaaaccagaggcgatc
gcatga
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