Rhodanobacter thiooxydans: LRK53_13510
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Entry
LRK53_13510 CDS
T08065
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRK53_13510 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rth03019
]
LRK53_13510 (pcnB)
Enzymes [BR:
rth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
LRK53_13510 (pcnB)
Messenger RNA biogenesis [BR:
rth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LRK53_13510 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
DUF3629
Motif
Other DBs
NCBI-ProteinID:
UJJ53970
LinkDB
All DBs
Position
complement(2983086..2984432)
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AA seq
448 aa
AA seq
DB search
MNLESRIDATPTLRIIPRDQHIISRKNISKAALRVLYRLNEAGFAAYLVGGAVRDLLLGL
RPKDFDVATDATPDEVKKLFRNCRLIGRRFRLAHVVFGPEIIEVATFRGTGEEGGEGDRH
IVDGRIVRDNIWGTIEEDALRRDFRVNAMYYDISDFSVRDYVGGMQDLEDRVLRLIGDPD
TRYHEDPVRMLRAARLAAKLGMRIDAAAAAPFETLGPLLADAAPARLFDESLKMFLTGHG
LKSFRVLEQCGLLKFLFPATARALRRGDEALRALVEHGLANTDARIAEGKSVTPAFLFAV
LLWGEVRDVAHQLIDRGVEGNEAWSRAAAQVVGEQCQRVAIPRRFTFTMEEIWSLQPRFE
QVQRKRVFRLLAHPRFRAAFDFLLLRGDESPAMRELGQWWAHAQQLPPDVLAAALPAGGG
DLVVAPVVGRPPRPRRRRRRSADRSGSV
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
ttgaatctcgaatcgaggatcgacgccacgccgacgctgcggatcattccgcgcgaccag
cacatcatctcgcgcaagaacatcagcaaggcggcgttgcgcgtgctgtaccgcctcaac
gaggccggctttgccgcctacctggtcggcggcgcggtgcgcgacctgctgctggggctg
cggccgaaggacttcgacgtggccaccgacgccacgccggacgaggtgaagaagctgttc
cgcaactgccgcctgatcggccgccgcttccggctggcgcacgtggtgtttggcccggag
atcatcgaggtggccaccttccgcggcaccggcgaggaaggcggcgagggcgaccgccac
atcgtcgacggtcgcatcgtgcgcgacaacatctggggcacgatcgaggaggacgcgctg
cgccgcgacttccgcgtcaacgcgatgtactacgacatcagcgacttctcggtgcgtgat
tacgtcggcggcatgcaggatctcgaagatcgcgtgctgcgcctgatcggagaccccgac
acccgctaccacgaggacccggtgcgcatgctgcgcgcggcgcggctggcggccaagctc
ggcatgcgcatcgacgccgcggcggcggcaccgttcgagacgctggggccgctgctggct
gacgccgcaccggcgcggctgttcgacgagtcgctgaagatgttcctgaccgggcacggg
ctgaagagcttccgcgtgctggagcagtgcggcctgctgaaattcctgttcccggccacc
gcgcgcgcgctgcggcgcggcgacgaggcgctgcgtgcgctggtcgagcacggcctggcg
aacaccgacgcgcggatcgccgagggcaagtcggtgaccccggcgttcctgttcgcggtg
ctgctgtggggcgaggtgcgcgacgtggcgcaccagctgatcgaccgcggcgtcgaaggc
aatgaggcctggtcgcgcgccgcggcgcaggtggtcggcgaacagtgccagcgggtggcg
atcccgcgccggttcaccttcaccatggaggagatctggtcgctgcagccgcgcttcgag
caggtccagcgcaagcgggtgttccgcctgctggcgcacccgcgctttcgcgccgcgttc
gatttcctgctgctgcgcggcgatgagtcgccggcgatgcgcgagctgggccagtggtgg
gcgcatgcacagcaactgccgccggacgtgctggccgccgcgctgccagccggcggcggc
gatctcgtggtggcaccggtggtcggccggccgccgcgcccgcgacgccggcggcgccgg
tcggccgacaggtcgggttccgtgtga
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