Rhodanobacter thiooxydans: LRK53_15600
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Entry
LRK53_15600 CDS
T08065
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRK53_15600 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rth03019
]
LRK53_15600 (recQ)
03400 DNA repair and recombination proteins [BR:
rth03400
]
LRK53_15600 (recQ)
Enzymes [BR:
rth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRK53_15600 (recQ)
Messenger RNA biogenesis [BR:
rth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRK53_15600 (recQ)
DNA repair and recombination proteins [BR:
rth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LRK53_15600 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
HHH
Helicase_Sgs1
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
UJJ54362
LinkDB
All DBs
Position
complement(3418634..3420463)
Genome browser
AA seq
609 aa
AA seq
DB search
MNRLSALELLQSIFGYPSFRGQQQAVVEHLAEGGDALVLMPTGGGKSLCYQIPALLRQGT
GIVVSPLIALMQDQVDALREAGVAAAYLNSSLGAAAQREVERQLLAGELNLLYVAPERLL
TSRFLGLLESIEVALFAIDEAHCVSQWGHDFRPEYRELVVLHQRFPQVPRIALTATADPR
TREEIVERLALQEARRFVSSFDRPNIGYRVGLRHNAKRQLAEFLQGHRGESGIVYCLSRR
KVDDTAAWLAEAGVEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMGIDKPDVRF
VAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESDDERKRVERQ
KLESLLAYAEATDCRRQLLLGAFGESHPGACGHCDNCVAPPKTWNATVPAQKALSAVYRT
GQRFGSGHVIDVLRGEETERVLALDHHRLSTFGIGADLDEKQWRSVFRQLLAAGLLEADA
EGYGTLRLTAASRSVLSGGRQVRLREDARPERASRRRRDSTLVTSGKGGGSLGIEAYEQD
LWDALRTLRTQLAKQQGVPPYVVFHDATLLAMLRAMPANEDELAGVSGVGEAKLKRYGRD
FLAVINAPA
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaacaggctctcagccctcgagctgctgcaaagcattttcggttatcccagtttccgc
ggccagcagcaggccgtggtcgagcatcttgccgagggcggcgacgcgctggtgctgatg
cccaccggcggcggcaagtcgctgtgctaccagattcccgcgctgctgcgccagggcacc
ggcatcgtggtgtcgccgctgatcgcgctgatgcaggaccaggtggatgccttgcgcgaa
gccggcgtggcggccgcctatctcaactccagcctgggcgcggcagcgcagcgcgaggtg
gagcgccagctgctggccggcgagctgaacctgctctacgtcgcgcccgagcggctgctc
acgtcgcgtttcctgggcctgctggaaagcatcgaggtggcgctgttcgcgatcgacgag
gcgcactgcgtgtcgcagtggggccacgacttccgccccgagtaccgcgagctggtggtg
ctgcaccagcgtttcccgcaggtgccacgcatcgcgctcaccgccaccgccgacccgcgc
acgcgcgaggagatcgtggagcggctggcgctgcaggaggcgcggcgcttcgtctccagc
ttcgaccggccgaacatcggctaccgggtcggcctgcgccacaacgcgaagcgtcagctc
gccgaattcctgcagggtcaccgcggcgagtccggcatcgtgtactgcctcagccggcgc
aaggtggacgacaccgccgcatggctggccgaggcgggcgtcgaggcgctgccgtaccac
gccgggctggacgcggccacccgcgcgaagaaccagcagcgcttcctgcgcgaggacggc
gtggtgatggtggccaccgtcgcgttcggcatgggcatcgacaagcccgacgtgcgcttc
gtggcgcacctggacctgccgcgcagcatcgagggctactaccaggagaccggccgcgcc
ggccgcgacgggctgccggccgaagcgtggatgatctacggcctgtccgacgtggtcacc
atgagccagatgatcgcgcagtccgaatcggacgacgagcgcaagcgggtcgagcggcag
aagctggaatcgctgctggcgtatgccgaggccaccgactgccgccgccagctgctgctg
ggcgcgttcggcgaaagccaccccggcgcttgcggccattgcgacaactgcgtcgcgccg
ccgaagacctggaacgccacggtgccggcgcagaaggcgctgtcggcggtgtaccgcacc
ggccagcgcttcggctccggccacgtcatcgacgtgctgcgcggcgaggaaaccgagcgc
gtgctcgccctcgaccaccaccggctcagcaccttcggtatcggcgccgatctcgacgag
aagcagtggcgctcggtattccgccagctgctcgccgccggcctgctggaggccgacgcc
gaaggctacggcacactgcgcctcaccgccgccagccgcagtgtgctcagcggcggccgc
caggtgaggctgcgcgaggatgcccgtcccgagcgcgccagccggcgccgccgtgacagc
acgctggtcacatccggtaaaggcggcggcagcctcggcatcgaggcctacgaacaggac
ttgtgggacgcgctgcgcaccttgcgcacgcaactggcgaagcagcagggcgtgccgccg
tacgtggtgttccacgacgccaccttgctggcgatgctgcgcgccatgccggccaacgag
gacgagctggccggggtcagcggcgtgggcgaggccaagctcaagcgctacggccgcgac
ttcctggcggtgatcaacgcgcccgcctga
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