Rhodanobacter thiooxydans: LRK53_15705
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Entry
LRK53_15705 CDS
T08065
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth02020
Two-component system
rth02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LRK53_15705
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LRK53_15705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rth03021
]
LRK53_15705
Transcription machinery [BR:
rth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LRK53_15705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_31
HTH_38
Motif
Other DBs
NCBI-ProteinID:
UJJ54383
LinkDB
All DBs
Position
3437934..3439391
Genome browser
AA seq
485 aa
AA seq
DB search
MKPALQFRLHQQLTLTPQLQQAIRLLQLSQLELEAELRQIAESNPLLEFAEEVEDEEATE
DAVVESDYPSVEAVAATAGDDGETSDWSDGGVAETPIDFSSNSVGSNSGSGTRGDEDFEP
QNAAPETLQQHLLWQLNLASFTPRQHLIATVLIDALNPAGYLAEGLEAILAALPAAFDAS
IAEIEEVRRCLQGFDPAGVASLDLRDCLRVQLEQFDPDTPQRDLALRIVDTELELLARND
ITRLARRLRTDENDVADAAVLIRSLDPRPGAALDATPVEYVAPDVYALRDGTRWRVSLNP
DAQPRLGLNQHYCGLIAQARGEDASWMRGQLQEARWLIKSLESRAETLLKVAEAIVRRQS
AFLDYGPEAMHPLVLREVAEEVGMHESTISRVTTRKYLHTPRGTFELKYFFSSGVSTEDG
GSASATAIQAMLRKLIDAEDVRKPLSDLAIAEELQRKGIQVARRTVAKYREGLRIPTSSE
RQRAG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccgcactgcagtttcgcctccaccagcagctgaccctgacgccgcaactgcag
caggcgatacgcctgttgcagctgtcgcagctggagctggaagccgaattgcggcagatt
gccgagagcaacccgttgctggagttcgccgaggaagtcgaggacgaggaggcgaccgag
gacgccgtcgtcgaaagcgactaccccagcgtcgaagcggtcgccgccaccgccggcgac
gacggcgagaccagcgactggtccgacggcggcgtggccgaaacgccgatcgacttctcc
agcaacagcgtcggcagcaacagcggcagcggcacgcgcggcgatgaggatttcgagccg
cagaacgccgcgccggaaaccctgcagcagcacttgctgtggcagctcaacctggcctcg
ttcaccccgcgccagcacctgatcgccaccgtgctgatcgacgcgctgaaccctgccggc
tacctggccgaggggctggaagccatcctcgccgcgttgcccgccgccttcgacgccagc
atcgccgagatcgaggaggtgcgccgctgcctgcagggtttcgaccccgccggcgtggcc
agcctggacctgcgcgactgcctgcgcgtgcaactggaacagttcgacccggacacgccg
cagcgcgacctcgcgctgcgcatcgtcgacaccgagctggaactgctggcgcgcaacgac
atcacccggctggcgcggcgcctgcgcaccgacgagaacgacgtggccgacgcggccgtg
ctgatccgcagcctcgacccgcgccccggcgccgccctcgacgccaccccggtggaatac
gtggcgccggacgtctacgcgctgcgcgacggcacccgctggcgggtcagcctgaatccg
gacgcgcagccgcggctgggcctgaaccagcactactgcggcctgatcgcccaggcccgc
ggcgaggacgccagctggatgcgcggccagctgcaggaggcgcgctggctgatcaagagc
ctggaatcgcgcgccgaaaccctgctgaaggtcgccgaggcgatcgtgcggcggcaaagc
gccttcctcgactacggccccgaggcgatgcacccgctggtgctgcgcgaggtggccgag
gaagtgggcatgcacgagtcgaccatctcgcgcgtcaccacgcgcaagtacctgcacacc
ccgcgcggcaccttcgagctgaagtatttcttttccagtggcgtgtccaccgaggacggc
ggcagcgcctcggccaccgcgatccaggccatgctgcgcaagctgatcgacgccgaggac
gtgcgcaagccattgtccgacctggcgatcgccgaagaattgcagcgcaagggcatccag
gtcgcccgccgcaccgtggccaagtatcgggagggactgcgcatacccacctccagcgaa
cgccagcgcgcgggctga
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