Rhodanobacter thiooxydans: LRK53_17040
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Entry
LRK53_17040 CDS
T08065
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth00300
Lysine biosynthesis
rth00470
D-Amino acid metabolism
rth01100
Metabolic pathways
rth01110
Biosynthesis of secondary metabolites
rth01120
Microbial metabolism in diverse environments
rth01230
Biosynthesis of amino acids
Module
rth_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
LRK53_17040 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
LRK53_17040 (lysA)
Enzymes [BR:
rth01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
LRK53_17040 (lysA)
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GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
DUF6781
Motif
Other DBs
NCBI-ProteinID:
UJJ54628
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All DBs
Position
3743623..3744927
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AA seq
434 aa
AA seq
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MPTQTTNRPAAQETARETDGAPGMFDGVDLRQLAERIATPFHAYSASAIRQRIDELQAAL
AGLDAAICFAVKANPNLAILQLMANAGVGADIVSVGELRRALNAGIPAERIVFSGVGKSA
DEIAGALNVGIMHFNVESLDELHTLQRLAKAQEVTARAAMRINPDVDAQTHARISTGKSE
NKFGVSIDEARRWFAGRKALTHVQLDGLHVHIGSQILSLDPFRLALQRVAAFWRELEQAG
HPVNSIDVGGGLGVCYRAGVDRPLAATDYVGVIRAALAGFRGRLLLEPGRWLVAEAGVLL
TRVLRIKQGAERRFLVLDAAMNDLQRPSLYDAWHDIVPVADEPRPPATYDIVGPVCETGD
TFARARELPECSAGDLLLIRATGAYGASMASSYNSRTLAAEVLLDQGRYAVVRRRQHFEE
MIAGEQPARNWETA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgcagacgacgaaccgcccggcagcgcaggaaaccgcccgggaaacggacggt
gcccccggcatgttcgacggcgtcgacctgcggcaactggccgaacgcatcgccaccccc
tttcatgcctactccgccagcgcgatccgccagcgcatcgacgaactccaggccgcgctg
gccggcctcgacgccgccatctgcttcgcggtcaaggccaacccgaacctcgccatcctg
caattgatggcgaacgccggcgtcggcgccgacatcgtctcggtcggcgaactgcgccgc
gcgctcaacgccggcatcccggccgagcgcatcgtgttttccggcgtcggcaagagcgcc
gacgagatcgccggcgcgttgaacgtcggcatcatgcacttcaacgtcgaatcgctggac
gagctgcacaccctgcagcgcctcgcgaaagcgcaagaggtgaccgcgcgtgccgcaatg
cgcatcaaccccgacgtggacgcgcagacccacgcgaggatctccaccggcaaatcggaa
aacaagttcggcgtcagcatcgacgaggcacgccgctggttcgccggccgcaaggcgctg
acccacgtgcagctcgacggcctgcacgtgcacattggctcgcagatcctcagcctcgac
ccgttccgcctcgcgctgcagcgggtcgccgcgttctggcgcgaactcgaacaggccggc
catccggtcaacagcatcgacgtgggcggcggtctcggcgtgtgctaccgcgccggcgtg
gaccggccactcgctgccaccgattacgtcggcgtgatccgcgccgcgctggccggcttc
cgcggccgcctgctgctggagccgggccgctggctggtggccgaggctggcgtgctgctg
acccgcgtgctgcgcatcaagcaaggcgccgagcggcgcttcctggtgctggacgcggcg
atgaacgatctgcagcggcccagcctgtacgacgcctggcacgacatcgtgccggtcgcg
gacgaaccgcgcccgccggctacctacgacatcgtcggcccggtctgcgaaaccggcgat
actttcgctcgggcgcgcgagctgcccgagtgctcggcgggcgacctcttgctgatcagg
gccaccggcgcgtacggtgcgtcgatggcgtccagctacaactcgcggacgctggcggcc
gaggtcctgctcgaccagggccgctatgccgtggtgcgccgtcgccagcacttcgaggaa
atgatcgccggcgagcagccggcgcggaactgggaaaccgcatga
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