Rhodanobacter thiooxydans: LRK53_17515
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Entry
LRK53_17515 CDS
T08065
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
rth
Rhodanobacter thiooxydans
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rth01002
]
LRK53_17515
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rth01011
]
LRK53_17515
Peptidases and inhibitors [BR:
rth01002
]
Cysteine peptidases
Family C82
LRK53_17515
Peptidoglycan biosynthesis and degradation proteins [BR:
rth01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
LRK53_17515
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
UJJ54715
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Position
complement(3839020..3840702)
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AA seq
560 aa
AA seq
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MPPKIPRAVRVIILLGLLLGVAAQAQQPDVRQAAGEQPLSPVAEQIRERVEQWRGAHADA
DAVGTPGGAVAVFYEQNRFAPAWTRPDDLDQLLAALRDVATDGLDPQDYALDELQRGRAV
LVDPRATPQQRAQFDLLATDACLGALLHLYRGKVDPATLDTHWNFDPRQLDQARGLKAVR
DALAQGTVGELFARARPQHPLYGQLRTALAKLREVAAQGGWPAIADGATLKPGTHDARVP
ALRQRLQLVGYAVGAGVDDLYDPTLEAALKQFQREQYLTPDGHLGKATLAALNVPVAARI
DQLRVNLERARWLLYQLQGDFVVVDIAGYQVAYYKDGKPVWRSRVQVGKPYRSTPVFKSK
ITYLTLNPTWTVPPTILKNDILPKVRKNRGYLAANRIRVLDNQGRELSPSSVDWANPRGI
VLRQDAGPGNSLGRLVIRFPNDYAVYMHDTPHQELFANERRTFSSGCIRVERPRELAELL
LDDQQRWDRASIDGAIDTLKTQTVMLRKPVTLLLAYWTVDLREDGRVGFRPDVYDRDPPL
LAALERPRVSPWLPVVATPP
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
gtgccgccaaaaatcccccgtgccgttcgcgtcatcatcctgctgggcctgctgctggga
gtggccgcgcaggcgcagcagcccgacgtccggcaggccgcgggcgagcagccgctgagc
ccggtggccgagcagatccgcgagcgggtcgaacagtggcgcggcgcgcatgccgacgcc
gatgccgtcgggacgcccggcggcgcggtggcggtgttctacgagcaaaaccgtttcgcg
ccggcgtggacgcgcccggacgacctcgatcagctgctggccgcgctgcgcgatgtggcc
acggacggcctcgacccgcaggactatgcgctggacgagctgcagcgcgggcgcgccgtg
ctcgtcgacccgcgcgccacgccgcagcagcgcgcgcagttcgacctgctggccaccgat
gcctgccttggcgcgctgctgcatctgtatcgcggcaaggtcgatccggccacgctggac
acccactggaacttcgatccgcgccagctcgaccaggcacggggcctcaaggcggtgcgc
gatgcgctggcgcaaggtacggtcggcgagttgttcgcgcgggcgcggccgcagcatccg
ctgtacggccagctgcgcactgcgctggcgaagctgcgcgaggtggcggcgcagggcggc
tggcccgcgattgcggacggcgccacgctgaagccgggcacgcacgatgcgcgcgtgccg
gcactgcgccagcggctgcagttggtcggctatgcggtgggtgcgggcgtggacgacctg
tacgacccgacgctggaggccgccttgaaacaattccagcgcgaacagtacctgacgccc
gacggccacctgggcaaggccaccctggcggcgctgaatgtgccggtcgcggcgcggatc
gaccagctgcgcgtgaacctggagcgcgcgcgctggctgctgtaccagctgcagggcgat
ttcgtggtggtcgacatcgccggctaccaggtcgcctactacaaggacggcaagccggtg
tggcgctcgcgcgtgcaggtgggcaagccgtaccgcagcacgccggtgttcaagtcgaag
atcacctacctcacgctcaacccgacctggacggtgccgccgaccatcctgaagaacgac
atcctgccgaaggtgcgcaagaaccgcggctaccttgccgccaaccgcatccgggtgctg
gacaatcagggccgcgagctgtcgccctccagcgtggactgggccaacccgcgcggcatc
gtgctgcgccaggacgccggcccgggcaattcgctgggcaggctggtgattcgcttcccg
aacgactacgcggtatacatgcacgacaccccgcaccaggagctgttcgccaacgagcgg
cgcaccttcagctccggctgcatccgggtggaacgtccacgcgagctggccgagctgctg
ctggatgatcagcagcgctgggaccgcgcgagcatcgacggcgcgatcgacacactgaag
acgcagaccgtgatgttgcgcaagccggtgaccctgctgctggcgtactggacggtggac
ctgcgcgaggacggccgggtcggcttccgtcccgacgtgtacgaccgcgacccgccgctg
cttgccgcgctggagcgtccgcgcgtgtcgccgtggctgccggtggttgcgacgccgccg
tga
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