Rhodanobacter thiooxydans: LRK53_17800
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Entry
LRK53_17800 CDS
T08065
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth00550
Peptidoglycan biosynthesis
rth01100
Metabolic pathways
rth01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
LRK53_17800 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
LRK53_17800 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rth01011
]
LRK53_17800 (mrdA)
Enzymes [BR:
rth01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
LRK53_17800 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
rth01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
LRK53_17800 (mrdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PBP_dimer_2
Motif
Other DBs
NCBI-ProteinID:
UJJ54768
LinkDB
All DBs
Position
complement(3908943..3910940)
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AA seq
665 aa
AA seq
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MKPRRSIKDPRGESLLFRRRALAGFVLIVLCLCLLVGRFVFLQVMRHDEFVTRSQANRVK
PRAIPPARGLIYDRNGVLLADNVPAFRLEVVPEQVKDMPALLARLGEVVPLDPGDLDAFR
KQLKQSRRFESVPLKLHLTEDEIARFAVNRWRFPGVDVVPYLTRRYPLRGLFAHVVGYVG
RIDADDLERLDPKRYQGTSHVGRSGIERSYENILHGTPGYELLEVNADGRTQRVLETHAP
TPGRNLYLSLDVRLQKAAEAAFEGRPGAAVAIDPRNGQVLAMVSVPSFDPNLFVNGIGQA
DYAALTNDPEKPLYNRALRGVYPPGSTVKPLIGLAGLETGMRTPQDTVVSTGVFYIPGQQ
RGYRDDQRGGVGRVDLVGAIEQSVNTYFYKLALDMGIDRFSGYMGKFGFGRPTGIDLVGE
SSGVLPSREWKAANFRQPWYPGETVIAGIGQGYWAVTPLQLGHAIATFAGHGVPYAPRLA
MATQGGVNAAPQPLANPPSGPSVIRKPADWDVVNQGMQQVIYGARGTGRQLGVGFPYLMA
GKSGTAERFSRRSEAYDTNRSTEYLATRHRAWFVAYAPADNPQIAVAAILESGAWGASAA
GPIVRTILDTWLASHGGEIADAKRLSVSAAPLPPIARNAPPDAGVEDSEPVEDLPTPATS
SGGTP
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccccggcgatcgatcaaggatccccgcggcgagagcctgctgttccggcgtcgc
gcgctggccggtttcgtgctgatcgtgttgtgcctgtgcctgctcgtcggccgcttcgtg
ttcctgcaggtgatgcgccacgacgagttcgtcacccgttcgcaggccaaccgggtcaag
ccgcgcgcgatcccgccggcgcgcgggctgatctacgaccgcaacggcgtgctgctggcc
gacaacgtgcccgcgttccgcctcgaagtggtgcccgagcaggtcaaggacatgccggcg
ctgctggcccggctgggcgaggtggtgccgctggacccgggcgacctggacgcgttccgc
aagcagctgaagcagagccggcgcttcgagagcgtgccgctgaagctgcacctgacggag
gacgagatcgcccgcttcgcggtgaaccgctggcgctttcccggtgtcgacgtggtgcct
tacctgacccggcgctatccgctgcgcgggttgttcgcgcacgtggtgggctatgtcggg
cgcatcgacgcggacgatctggaacggctcgaccccaagcgctaccaaggcaccagccac
gtcggccgcagcggcatcgagcgttcctacgaaaacatcctgcacggcacgccgggctac
gagctgctcgaggtgaatgccgacgggcgcacgcagcgcgtgctggagacgcatgcgccc
acgccgggcaggaatctctacctgagcctcgacgtgcgcctgcagaaagctgccgaagcg
gcgttcgagggccgtcccggcgcggcggtggcgatcgatccgcgcaatggccaggtgctg
gcgatggtcagcgtgcccagcttcgaccccaacctgttcgtcaacggtatcggacaggcc
gactacgccgcgctgaccaacgaccccgagaagccgctgtacaaccgcgcgctgcgcggg
gtgtatccgcccggctccacggtgaagccgctgatcggcctggccgggctggaaaccggc
atgcgcacgccgcaggacaccgtggtctccaccggcgtgttctacattcccggccagcag
cgcggctatcgcgacgaccagcgtggcggcgtggggcgggtcgacctggtgggggcgatc
gagcagtcggtgaacacctacttctacaagctcgcgctggacatgggtatcgaccggttc
agcgggtacatgggcaagttcggcttcggccgcccgaccggcatcgatctggtcggcgaa
tcctccggcgtgctgccctcgcgcgaatggaaggcggccaacttccgccagccgtggtac
ccgggcgagacggtgatcgccggcatcggccagggctactgggcggtgacgccgctgcag
ctgggccacgcgatcgccaccttcgccggccatggcgtgccgtacgcgccgcgtctggcg
atggcgacccagggcggcgtcaacgcagcgccgcagccgctggccaatccgccgagtggg
ccgtcggtgatccgcaagccggccgactgggacgtggtgaaccagggcatgcagcaggtg
atctacggcgcgcggggcaccggtcgccagcttggcgtcggctttccctacctgatggcc
ggcaagagcggcaccgccgagcgcttctcgcgccggtccgaggcctacgatacgaaccgc
agcacggagtacctggcgacccgccatcgcgcctggttcgttgcctacgcgccggccgac
aacccgcagatcgcggtggcggcgatcctggaatccggcgcctggggcgcctcggcggct
ggaccgatcgtgcgtaccatcctcgatacctggctggcgtcgcacggtggcgagatcgcg
gacgcgaaacgcctgtcggtatcggccgcgccgttgccgccgatagcccggaacgctccg
cccgacgccggcgtggaagacagcgagccggtggaggatctgccgacgccggccacgagc
agcggaggcacgccatga
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