Rhodanobacter thiooxydans: LRK53_18145
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Entry
LRK53_18145 CDS
T08065
Name
(GenBank) DHHA1 domain-containing protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03410
Base excision repair
rth03430
Mismatch repair
rth03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LRK53_18145
03430 Mismatch repair
LRK53_18145
03440 Homologous recombination
LRK53_18145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rth03400
]
LRK53_18145
DNA repair and recombination proteins [BR:
rth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LRK53_18145
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LRK53_18145
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LRK53_18145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHHA1
DHH
Peripla_BP_2
Motif
Other DBs
NCBI-ProteinID:
UJJ56738
LinkDB
All DBs
Position
unnamed:2971..4749
Genome browser
AA seq
592 aa
AA seq
DB search
MTQTTPMLPTTRDRPIDPAVLTRARSEGFTELQARVIAARVPASTSSLRDHIAPSARLLD
SPELLPDIDVAAGALADAVMDPSMHLAGVFDHDADGANAGAVFLLALTEYFGVPRDRIVL
LQSHRQREGYGVSDAFVERIINDLPRPCLIATGDQGSSDEPRLARLKAAGFCTVVTDHHG
VEGKGPPSALACVNPAREDSRFPDPLIAGVHVMWLTMCAVRQQLIRRGHLPEDAPTLAPL
LAWSAVGTTADAVSLARSRNNRAVIRYGLRLINNSKRAPWQAMRKVMKLESYFSTKDISH
GVGPRINARGRMADPLASLQFLTTTDEDQADYLAALLDSENEARKVVERTMTAVAMDIAS
VQAQAGMPAVVVHLPDGHSGVHGITASRIVEAFGRPTCCLSPKQGHPGILTGSLRTVPGV
HVRKALAAVATANPGLLLSYGGHAGAGGTALAEADLVRFQDAFCEAVAAQIDPSRLMPIT
WSDGPLGRAPDMSVIEELDALEPYGREFEPAAFTDRFVVEQVKPVGDGSHLKLQLRSNYG
SHSAIWFRAMTPGGRVPAGVGQEVLATYQLAANHFRGRTTVDIQVQAAQVIQ
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgacacagaccacgcccatgctcccgacgacgcgcgatcgacccatcgaccccgccgtg
ctcacccgagcccggtccgaaggtttcaccgagctgcaggcgcgcgtcatcgccgctcgc
gttcccgcgagcacctcgtcgttgcgagatcacatcgcgcccagcgcgcggctgctcgac
agcccggagctccttccggacatcgacgtggcggccggcgcacttgccgatgcggttatg
gatccgtccatgcacttggctggggtcttcgatcatgacgcggacggagcgaatgccggc
gcggtgttcctgttggcactgacagagtacttcggggtccccagggatcgcatcgtgttg
ctgcagagccatcgccagcgcgagggctatggcgtatcggacgcgtttgtcgagcggatc
atcaacgacttgccccgtccctgcctcattgccaccggcgaccagggcagcagtgatgag
cccaggctcgcacgcctcaaggcagcgggcttctgcacggtggtcaccgatcaccatggc
gtcgagggcaaggggccgccctcagccctcgcgtgcgtgaatccagcgcgcgaagactcg
cgcttccccgacccgttgattgccggcgtccacgtgatgtggctgacgatgtgcgcggtc
cggcagcagctcatccgccgcgggcacctgccggaggatgccccgacgctcgcgcccctg
ctggcttggagcgcggtcggcacgacggctgacgccgtgtccctcgcgcgatcgcgcaac
aaccgcgcggtgatccgctacggcctgcgcctgatcaacaactccaaacgtgcgccgtgg
caggccatgcgcaaagtgatgaaattggagagctacttctccaccaaggacatctcccac
ggcgtggggccgcggatcaatgcccgggggcgcatggccgatccgctggcatccctgcag
ttcctcaccacgaccgatgaggaccaggccgactacctggcggcgctgctcgacagcgag
aacgaagcacgaaaggtggttgagcggaccatgaccgccgtggcgatggatatcgccagc
gtgcaggcgcaggccggcatgcccgctgtggtggttcatcttcccgacggccacagcggc
gtgcatggaatcaccgcctcacgcatcgtggaggcctttggccggcccacgtgctgcctg
tcgcctaagcagggtcaccccggcatcctgaccggctcgctccgcaccgttcccggcgtg
cacgttcgcaaagcgcttgccgccgtggccaccgcgaatcccgggctcctgctctcgtac
ggcgggcatgccggcgcgggtggcacggcattggctgaggcggacctcgtgcgattccaa
gacgccttctgcgaggcagtggctgcccagatcgatccgtcgcgcctgatgccgatcacg
tggtctgacgggccgctggggcgcgcgccggacatgtccgtgatcgaggagctcgatgcg
ctcgagccgtacggtcgcgagttcgagcccgcggccttcacagaccgcttcgtagtggag
caggtcaagccggtgggcgacgggagccatctgaaactgcagctgcgcagcaactacggc
agtcactccgccatctggttccgcgccatgacgccaggggggcgggtcccggcaggcgtc
ggccaagaggtgctggccacctaccagctggctgcaaaccattttcgagggcgcacgacc
gtggacattcaggtccaggcggcgcaggtcattcagtga
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