Rhodanobacter thiooxydans: LRK53_18405
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Entry
LRK53_18405 CDS
T08065
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03420
Nucleotide excision repair
rth03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LRK53_18405
03430 Mismatch repair
LRK53_18405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rth03400
]
LRK53_18405
Enzymes [BR:
rth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRK53_18405
DNA repair and recombination proteins [BR:
rth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRK53_18405
MMR (mismatch excision repair)
Other MMR factors
LRK53_18405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_22
AAA_16
S1-like
ResIII
AAA_11
Herpes_ori_bp
T2SSE
Motif
Other DBs
NCBI-ProteinID:
UJJ56788
LinkDB
All DBs
Position
unnamed:54755..57094
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AA seq
779 aa
AA seq
DB search
MSHSARRELTAEQKAVVRHTEGHALVEAAPGSGKTTVLVAYLRRLVKTGGNPNAMLALMF
NKSAQLSFEARLRRALGEGPIPDVRTLHSIGNRILAQLVSGGMLPREKLETSGKKADAFA
RRALKEAWARTGGSATPTQAQYQGFSQFITLVKSDLRPPAEVFEESGFAPDCRAFVIAFQ
LLLQDQEKRRVIFYDDLIYRPMVYLDAHPELWSMFANRYERIVVDEFQDINAISFFMVQG
LAGTRASVMGCGDPKQSIYAFRGSRVTLMTRHFEQVFQPCTRYPMSRTFRFGHEIAMMAN
NLITLSEEKGLGLVVADNANPKTRVERMPLKAGKDSGVVELLAPYEHAGRLRDTAMLARN
FSHLVPYEIELAEAGVPYHVYGREGLLFLPEIAALVCAVSLVAGRWIIEPEDRVHFIFSL
LTTPSPFITYEILREVAEDMEPYLEGAGRRELPGMLAKIAASIRSKNARGAQNLDERVDA
LRLLVGGTLAQAPAATIVRAYMAHTRMRDVIERAAPTPEQAAESLGNLDAFVKLAERAGS
IDEFLEVLGPMAALKGDEPPAGDHVMLTTLHRSKGLEWSLVMMVGLTRGVFPSALPDKDV
DEERRLCFVGITRAMDRLVLFHPDDSTLDRTLTDLAWHHRQSDPSSASPYLFDCDHGPVR
VASQLIEAGATGTIVTRQDRAMTAYMEALGVPISIELTPEAQAQQVRAASVADCGQLPPG
YKPRPSEELYHPEHGACVVVEALYAPVHMMRRLADNERFSAVVDRANGWVIPLKLPATA
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgagtcactccgcacgacgcgaactcacagcagagcagaaggccgttgtgcgccatacc
gagggtcacgctttggtcgaggcagcaccgggctccggcaagaccacggtgctcgtcgcc
tacctgcgccgcctcgtaaagactggcggcaatcccaacgcgatgctggcactgatgttc
aacaagagcgcccagctgagctttgaggcccggctgcgacgtgctctgggcgagggtccg
atccctgacgtgcgcacgctgcattccatcggcaaccgcatcctcgcgcagctggtgtcc
ggcggcatgctcccgcgcgaaaagctcgagacgtccggcaagaaggccgacgccttcgcg
aggcgcgcgctcaaagaggcctgggcccgcaccggcggctccgccacgccgacccaggcc
cagtaccaggggttcagccagttcatcacgctcgtcaaatccgacctgcgaccgccggcc
gaggtcttcgaggagagcggcttcgctccggactgccgcgcgttcgtcatcgccttccag
ctgctacttcaggaccaggagaagcggcgggtgatcttctacgacgatctgatctatcgc
cccatggtgtatctggacgcacatcctgagctgtggtcgatgtttgccaaccgctacgag
cgcatcgtcgtggacgagttccaggacatcaacgccatcagcttcttcatggtccagggg
ctggcgggaacgcgcgcttcggtgatgggttgtggcgatcccaagcagagcatctacgcc
tttcgcggcagtcgcgtcacgttgatgacccgccacttcgagcaggtatttcagccctgc
actcgctacccgatgagccgcacgttccggttcggccacgagatcgcaatgatggcgaac
aacctcatcacgctgagcgaggaaaaggggctcggcctggtggtcgcggacaacgccaat
ccgaagacccgcgtggagcggatgcccttgaaggcgggcaaggattccggtgtcgtcgaa
ctcctggcgccgtatgagcacgccgggcgcctgcgcgataccgcgatgctggcgcgcaac
ttcagccaccttgtgccctacgaaatcgagctggcggaggcgggcgtgccgtatcacgtc
tacggccgcgaaggcctcctgttcctgccggaaatcgccgcgctggtgtgcgcagtcagc
ctagtcgccgggcgttggatcatagagcccgaagatcgcgtccacttcatcttctctctc
ctcacgacgcccagcccgttcatcacctacgagatcctgcgcgaggtggccgaggacatg
gagccctatctggagggcgccgggcgtcgggagctgccgggcatgctggccaagatcgcc
gcgtcgatccggtccaagaacgcgcgcggcgcgcagaacctcgacgagcgcgtcgacgcg
ctgcgcctgttggtgggcggtacgctggcgcaggcgccggccgccacgatcgtgcgggcc
tacatggcccatacccgtatgcgcgacgtcatcgagcgtgccgcgccgacgccggagcag
gctgccgagtcgctggggaacctggacgcgttcgtgaagctcgccgagcgcgccggctcg
atcgatgagtttctggaggtgctcgggccgatggcagcactcaagggcgatgagcctccc
gccggagaccacgtcatgctgaccacactccaccgcagcaagggtctggaatggtcgctc
gtcatgatggtcgggctgacccgcggcgtctttccgagcgcgctgccggacaaagatgtc
gatgaggagcgcaggctgtgcttcgtgggcatcacgcgtgccatggaccgcctggttctc
ttccacccggacgattcgacgctcgatcgcacgttgaccgacctggcctggcaccaccgg
caaagtgatccgtcgtcggcgagcccttacttgttcgactgcgaccacggccccgtccgc
gtggccagccagctgattgaagcgggagccacgggcaccatcgtgacgcgacaggaccgc
gccatgacggcctacatggaagcgctgggcgtacccatcagcatcgagctgacgcctgag
gcgcaggcccagcaggtgcgcgcggcaagcgtggccgactgcgggcagctccctcccggg
tacaagccgcgccccagtgaggagctttaccaccccgagcacggcgcatgcgtggtcgtc
gaggcgctctacgcccccgtccacatgatgcggcgcttggcggacaacgaacgatttagc
gcagtcgtggacagggccaacggctgggtgatccctctgaaactgccggcgaccgcctga
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