KEGG   Remersonia thermophila: 98121893
Entry
98121893          CDS       T10833                                 
Symbol
VTJ83DRAFT_1124
Name
(RefSeq) hypothetical protein
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
rthe  Remersonia thermophila
Pathway
rthe03020  RNA polymerase
rthe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rthe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    98121893 (VTJ83DRAFT_1124)
  09124 Replication and repair
   03420 Nucleotide excision repair
    98121893 (VTJ83DRAFT_1124)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rthe03021]
    98121893 (VTJ83DRAFT_1124)
   03400 DNA repair and recombination proteins [BR:rthe03400]
    98121893 (VTJ83DRAFT_1124)
Transcription machinery [BR:rthe03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     98121893 (VTJ83DRAFT_1124)
  RNA polymerase III system
   RNA polymerase III
     98121893 (VTJ83DRAFT_1124)
  RNA polymerase I system
   RNA polymerase I
     98121893 (VTJ83DRAFT_1124)
DNA repair and recombination proteins [BR:rthe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      98121893 (VTJ83DRAFT_1124)
SSDB
Motif
Pfam: RNA_pol_Rpb6 Pox_RNA_Pol_19
Other DBs
NCBI-GeneID: 98121893
NCBI-ProteinID: XP_070870477
JGI: Remth1_1124
LinkDB
Position
1:complement(join(4032489..4032525,4032585..4032704,4032837..4033121,4033180..4033220))
AA seq 160 aa
MSDYGNDDDRDRDLNDEPAYEDDPDEYYEPEPEPADEDEAARAQDQDGENHDADHVVASG
DPNAAANHGRGNEKSHKDKKIPNDQRTTTPFMTKYERARILGTRALQISMNAPVLVDLEG
ETDPLQIAIKELREKKIPLIVRRYLPDGYYEDWTCEELLQ
NT seq 483 nt   +upstreamnt  +downstreamnt
atgtctgactacgggaacgacgacgatcgcgatcgcgatctcaacgacgagcccgcctac
gaggacgaccccgatgagtactacgagcccgagcccgagcccgcggatgaggacgaggcg
gcgcgcgcgcaggaccaagacggcgagaatcacgacgccgaccatgtcgttgcgtcgggc
gaccccaacgcggcggcgaaccacggccgcggaaacgagaaatcacacaaggacaagaag
atccccaacgaccagcgcacgaccacgcccttcatgaccaagtacgagcgggcgcgcatc
ctggggacgagggcgctgcagatcagcatgaacgcccccgtcctggttgacctggagggc
gagacggacccgctccagatcgccatcaaggagctgagggagaagaagattcctctcatt
gtgcgccggtaccttccggatggatactatgaggactggacgtgcgaggagcttcttcag
tga

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