Remersonia thermophila: 98121936
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Entry
98121936 CDS
T10833
Symbol
VTJ83DRAFT_1163
Name
(RefSeq) hypothetical protein
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
rthe Remersonia thermophila
Pathway
rthe03030
DNA replication
rthe03410
Base excision repair
rthe03420
Nucleotide excision repair
rthe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
98121936 (VTJ83DRAFT_1163)
03410 Base excision repair
98121936 (VTJ83DRAFT_1163)
03420 Nucleotide excision repair
98121936 (VTJ83DRAFT_1163)
03430 Mismatch repair
98121936 (VTJ83DRAFT_1163)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rthe03032
]
98121936 (VTJ83DRAFT_1163)
03400 DNA repair and recombination proteins [BR:
rthe03400
]
98121936 (VTJ83DRAFT_1163)
Enzymes [BR:
rthe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
98121936 (VTJ83DRAFT_1163)
6.5.1.6 DNA ligase (ATP or NAD+)
98121936 (VTJ83DRAFT_1163)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
98121936 (VTJ83DRAFT_1163)
DNA replication proteins [BR:
rthe03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
98121936 (VTJ83DRAFT_1163)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
98121936 (VTJ83DRAFT_1163)
DNA repair and recombination proteins [BR:
rthe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
98121936 (VTJ83DRAFT_1163)
NER (nucleotide excision repair)
Other NER factors
98121936 (VTJ83DRAFT_1163)
MMR (mismatch excision repair)
Other MMR factors
98121936 (VTJ83DRAFT_1163)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
MctB
PNKP_ligase
Motif
Other DBs
NCBI-GeneID:
98121936
NCBI-ProteinID:
XP_070870516
JGI:
Remth1_1163
LinkDB
All DBs
Position
1:complement(join(4174787..4175323,4175387..4176155,4176213..4177359,4177440..4177576,4177755..4178449))
Genome browser
AA seq
1094 aa
AA seq
DB search
MTWSSDLAARLSTRLLPACLSPGWICRATSRKIPCWYKSSNEPRFRPGSSHFPSVDRLRF
CSVPIAKGSIRPFPHLPWAAPHTVTCHRPSALNFPEPTLEKLALSVLPKTTALGRPWFNA
SSTPPFRPASTAAAARAFPGIGVGAIPRRFYTHHRLRCDRNNLRSILRTTPPSSDPLLLL
LLLLRRVPSCLVQTQQGVRLGSTAAPPLAFLGLASTRPTAAAMAPSKQTTLGKFFGKPNG
TATKPAQLQQTTLSFATKAAKEDEAKQDDKENSGSDQETKKKRGRPPKVKDTEMKDAEPA
EDEDVEVAAPASKRARKSRKVIDDEDDDGDVVMKDESAAEPKKAKSPSPKSKPSSPKSKR
SSPKSKEKAPEPAAAAAAKTEAEEETPESSSEVEEEELQDDDEKPEVAAKARQKVQAALK
SHAKHPYPDWKAGEPVPYAALCTTFSLIELTTKRLEIMAHCSLFLQQVLRLTPEDLLPTV
LLMVNKLAPDYAGIELGIGESLIMKAIGETTGRSLAVIKQDQKEIGDLGLVACKSRSTQP
TMFKPKPLTVRGVHKGLMGIATVTGNGAQGRKVDGIKKLLAAADANNTGKIDINKDKGGP
SEAKYLVRFLEGKLRLGLAEKTVIVSLAQAMVAHEAAQKGTVPSTADMEQGEALLKTVYS
ELPSYDVIIPAMVEHGIQNLKEHCKLRPGVPLKPMLAKPTKAITEVLDRFEGQTFTCEYK
YDGERAQIHYVAKDTNEELSQSAVGASKEVGKGVAAIFSRNSEDLSKKYPDILEKLPTWV
NEDTKSFVLDCESVAWDVKEKKVLPFQQLMTRKKKDVKAEDIKVKVCVFAFDLLYLNGEP
VVQRSLRERRELLHKAFKPVEGEFAFATAMNGQELDEIQAFLEESVKASCEGLMVKMLDG
EESGYEPSKRSRNWLKIKKDYLSGVGDSLDLVVLGAYHGKGKRTSVYGAFLLACYNPGTD
TYETVCNIGTGFSEAVLEELYAQLSEIVIDRPKPFYAHSSGGQHQPDVWFEPRYVWEVKT
ADLTLSPRYKAGMREGVDPSGEKGISLRFPRFIRVRDDKKPDEATTSRQVAEMYRKQESV
ANSKGPAVDDDFEY
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgacatggagttccgatttggcggccaggctatccacccgtttgctgcctgcctgccta
agtcctgggtggatttgcagagcaacctcccgcaagatcccatgctggtataaatcttca
aacgaacctcgattccgcccggggtcctctcattttccctctgtcgaccgcctcagattc
tgttctgtgcccattgccaagggttcaatccgcccatttccgcatcttccctgggcggca
cctcacaccgtcacctgccaccgaccctcagccctgaattttccagagcccaccctcgag
aagctggcgttgtcagtccttcccaaaaccaccgccctcggcaggccgtggttcaacgcc
tcgtcgacccctccgttccgcccagccagcaccgcagccgcggcacgagcctttccaggg
atcggcgttggcgctatcccccgccgcttctacacccaccatcgcctacggtgcgatcgc
aacaacctccgctcgatactccggaccacgccgccctcttcagacccgctgctgctgctg
ctgctgctgctgcgacgagtcccgagctgcctggtacaaactcaacaaggcgtgagacta
ggaagcacagcagcgccgcctctggcattcttgggattggcatcgacaagaccgacagct
gcagcaatggcgccgtcaaaacagacaaccctgggcaagttctttggcaagccgaatggg
acggcaaccaagccagcacagctgcagcagacaacgctgagctttgcgaccaaggcggcc
aaggaggatgaggcgaagcaggatgacaaggaaaacagcgggtcggatcaagagaccaaa
aagaagcgaggccggcctcccaaggtgaaggataccgagatgaaggatgcggagcccgcc
gaggacgaggacgtcgaggttgcggctcccgcgagcaaacgcgcgcggaagagcaggaag
gtgatcgacgacgaggacgacgacggggacgttgttatgaaggatgaatccgcggcagag
ccgaagaaggcgaagtcgccgtctccgaaatcgaagccgtcatctccgaaatcaaagcga
tcatctccgaaatcgaaagaaaaggcccctgaaccagccgccgccgccgccgccaagaca
gaagcggaggaggagacgcccgaatcgtcatccgaggtcgaggaggaggagcttcaggat
gacgatgagaagccagaggtggcagccaaggcgcggcagaaggtgcaggcggctctcaag
tcgcatgccaaacacccgtacccggactggaaggcgggcgagccggtcccgtatgctgct
ctctgcacgaccttctcgctcatcgagctcaccaccaagcgtctcgagatcatggcgcat
tgctctctgttcctgcaacaggtcttgcggctcacacccgaggaccttctcccgacggtc
ctcctcatggtcaacaagctcgcacccgactatgcgggcattgagctcggcattggcgag
tcgctcatcatgaaggccatcggcgagacgacgggccgcagcctggccgtcatcaagcag
gaccagaaggagattggcgatcttggcttggtcgcctgcaagtcgcggtcgacgcagccg
accatgttcaagcccaagcctctgaccgtgcgcggcgtccacaagggcctgatgggaatc
gcgaccgtgacgggcaacggcgctcaggggcgtaaggtggatggcatcaagaagctcctt
gccgccgccgacgcaaacaacaccggcaagatcgacatcaacaaggataaaggcgggccg
agcgaagcgaagtacctggttcgttttctcgagggcaagctgagactgggcttggccgag
aagacggtcatcgtttcgctcgcgcaggccatggtggcgcacgaggcggctcagaagggc
acggtgccgagcaccgccgacatggagcagggagaagcgcttctcaagacggtgtacagc
gagctgccaagctacgatgtcatcatcccggcgatggtggagcacggcatccagaacctc
aaggagcactgcaagctgcgaccgggcgtgccgctcaagcctatgttggcgaaacccacc
aaggccatcaccgaggtgctggacaggttcgaagggcagacgtttacttgcgagtacaag
tacgacggcgagcgcgcgcaaatccactacgtcgccaaggacaccaacgaggagctcagc
cagtcggccgtcggcgcgtccaaggaggtcggcaaaggcgtggcggccatcttttcgagg
aactcggaagacctgtccaagaagtaccccgatatcctcgagaagctgcccacttgggtc
aacgaggacaccaagagcttcgtcctcgattgcgaatcggtggcgtgggacgtcaaggag
aagaaggtcctgccgttccagcagctcatgacgcgcaagaagaaggacgtaaaggctgag
gatatcaaggtcaaggtgtgcgtctttgccttcgatcttctctacctcaacggcgagccg
gtcgtgcaaaggtcgctcagggagcgccgtgagctgctgcacaaggcattcaagcccgtc
gagggcgagtttgcgtttgccacggcgatgaacggccaggagctggatgagatccaggcc
tttctcgaagagtcggtcaaggcgtcgtgcgaggggctgatggtcaagatgttggacggc
gaggagagcgggtacgagcccagcaagcggagcaggaactggctcaagatcaagaaagac
tacctctccggcgtgggcgactcccttgaccttgtcgtcctgggtgcgtatcatggcaag
ggcaagcgcacgtccgtctacggcgcattcctcctggcctgctacaacccgggtaccgat
acgtacgaaaccgtttgcaacatcggcacgggcttcagcgaggcggtcctcgaggagctg
tatgcccagctgtcggagattgtcattgaccgccccaagcccttctacgcgcacagctcg
ggaggccagcaccagcccgacgtctggttcgagccgcgctacgtgtgggaggtcaagacg
gcggatttgacgctcagcccacggtacaaggcaggaatgcgcgagggggtggatccgagc
ggcgaaaagggaattagcttgcggttcccaaggttcatccgggtgagagatgacaagaag
ccggatgaggccaccacgagcaggcaggtggcggagatgtatcggaagcaggagagcgtg
gcgaacagtaagggcccagcggtggatgatgattttgagtattag
DBGET
integrated database retrieval system
