KEGG   Remersonia thermophila: 98121936
Entry
98121936          CDS       T10833                                 
Symbol
VTJ83DRAFT_1163
Name
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rthe  Remersonia thermophila
Pathway
rthe03030  DNA replication
rthe03410  Base excision repair
rthe03420  Nucleotide excision repair
rthe03430  Mismatch repair
Brite
Enzymes [BR:rthe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     98121936 (VTJ83DRAFT_1163)
    6.5.1.6  DNA ligase (ATP or NAD+)
     98121936 (VTJ83DRAFT_1163)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     98121936 (VTJ83DRAFT_1163)
DNA replication proteins [BR:rthe03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    98121936 (VTJ83DRAFT_1163)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     98121936 (VTJ83DRAFT_1163)
DNA repair and recombination proteins [BR:rthe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     98121936 (VTJ83DRAFT_1163)
   NER (nucleotide excision repair)
    Other NER factors
     98121936 (VTJ83DRAFT_1163)
   MMR (mismatch excision repair)
    Other MMR factors
     98121936 (VTJ83DRAFT_1163)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase MctB PNKP_ligase
Other DBs
NCBI-GeneID: 98121936
NCBI-ProteinID: XP_070870516
JGI: Remth1_1163
LinkDB
Position
1:complement(join(4174787..4175323,4175387..4176155,4176213..4177359,4177440..4177576,4177755..4178449))
AA seq 1094 aa
MTWSSDLAARLSTRLLPACLSPGWICRATSRKIPCWYKSSNEPRFRPGSSHFPSVDRLRF
CSVPIAKGSIRPFPHLPWAAPHTVTCHRPSALNFPEPTLEKLALSVLPKTTALGRPWFNA
SSTPPFRPASTAAAARAFPGIGVGAIPRRFYTHHRLRCDRNNLRSILRTTPPSSDPLLLL
LLLLRRVPSCLVQTQQGVRLGSTAAPPLAFLGLASTRPTAAAMAPSKQTTLGKFFGKPNG
TATKPAQLQQTTLSFATKAAKEDEAKQDDKENSGSDQETKKKRGRPPKVKDTEMKDAEPA
EDEDVEVAAPASKRARKSRKVIDDEDDDGDVVMKDESAAEPKKAKSPSPKSKPSSPKSKR
SSPKSKEKAPEPAAAAAAKTEAEEETPESSSEVEEEELQDDDEKPEVAAKARQKVQAALK
SHAKHPYPDWKAGEPVPYAALCTTFSLIELTTKRLEIMAHCSLFLQQVLRLTPEDLLPTV
LLMVNKLAPDYAGIELGIGESLIMKAIGETTGRSLAVIKQDQKEIGDLGLVACKSRSTQP
TMFKPKPLTVRGVHKGLMGIATVTGNGAQGRKVDGIKKLLAAADANNTGKIDINKDKGGP
SEAKYLVRFLEGKLRLGLAEKTVIVSLAQAMVAHEAAQKGTVPSTADMEQGEALLKTVYS
ELPSYDVIIPAMVEHGIQNLKEHCKLRPGVPLKPMLAKPTKAITEVLDRFEGQTFTCEYK
YDGERAQIHYVAKDTNEELSQSAVGASKEVGKGVAAIFSRNSEDLSKKYPDILEKLPTWV
NEDTKSFVLDCESVAWDVKEKKVLPFQQLMTRKKKDVKAEDIKVKVCVFAFDLLYLNGEP
VVQRSLRERRELLHKAFKPVEGEFAFATAMNGQELDEIQAFLEESVKASCEGLMVKMLDG
EESGYEPSKRSRNWLKIKKDYLSGVGDSLDLVVLGAYHGKGKRTSVYGAFLLACYNPGTD
TYETVCNIGTGFSEAVLEELYAQLSEIVIDRPKPFYAHSSGGQHQPDVWFEPRYVWEVKT
ADLTLSPRYKAGMREGVDPSGEKGISLRFPRFIRVRDDKKPDEATTSRQVAEMYRKQESV
ANSKGPAVDDDFEY
NT seq 3285 nt   +upstreamnt  +downstreamnt
atgacatggagttccgatttggcggccaggctatccacccgtttgctgcctgcctgccta
agtcctgggtggatttgcagagcaacctcccgcaagatcccatgctggtataaatcttca
aacgaacctcgattccgcccggggtcctctcattttccctctgtcgaccgcctcagattc
tgttctgtgcccattgccaagggttcaatccgcccatttccgcatcttccctgggcggca
cctcacaccgtcacctgccaccgaccctcagccctgaattttccagagcccaccctcgag
aagctggcgttgtcagtccttcccaaaaccaccgccctcggcaggccgtggttcaacgcc
tcgtcgacccctccgttccgcccagccagcaccgcagccgcggcacgagcctttccaggg
atcggcgttggcgctatcccccgccgcttctacacccaccatcgcctacggtgcgatcgc
aacaacctccgctcgatactccggaccacgccgccctcttcagacccgctgctgctgctg
ctgctgctgctgcgacgagtcccgagctgcctggtacaaactcaacaaggcgtgagacta
ggaagcacagcagcgccgcctctggcattcttgggattggcatcgacaagaccgacagct
gcagcaatggcgccgtcaaaacagacaaccctgggcaagttctttggcaagccgaatggg
acggcaaccaagccagcacagctgcagcagacaacgctgagctttgcgaccaaggcggcc
aaggaggatgaggcgaagcaggatgacaaggaaaacagcgggtcggatcaagagaccaaa
aagaagcgaggccggcctcccaaggtgaaggataccgagatgaaggatgcggagcccgcc
gaggacgaggacgtcgaggttgcggctcccgcgagcaaacgcgcgcggaagagcaggaag
gtgatcgacgacgaggacgacgacggggacgttgttatgaaggatgaatccgcggcagag
ccgaagaaggcgaagtcgccgtctccgaaatcgaagccgtcatctccgaaatcaaagcga
tcatctccgaaatcgaaagaaaaggcccctgaaccagccgccgccgccgccgccaagaca
gaagcggaggaggagacgcccgaatcgtcatccgaggtcgaggaggaggagcttcaggat
gacgatgagaagccagaggtggcagccaaggcgcggcagaaggtgcaggcggctctcaag
tcgcatgccaaacacccgtacccggactggaaggcgggcgagccggtcccgtatgctgct
ctctgcacgaccttctcgctcatcgagctcaccaccaagcgtctcgagatcatggcgcat
tgctctctgttcctgcaacaggtcttgcggctcacacccgaggaccttctcccgacggtc
ctcctcatggtcaacaagctcgcacccgactatgcgggcattgagctcggcattggcgag
tcgctcatcatgaaggccatcggcgagacgacgggccgcagcctggccgtcatcaagcag
gaccagaaggagattggcgatcttggcttggtcgcctgcaagtcgcggtcgacgcagccg
accatgttcaagcccaagcctctgaccgtgcgcggcgtccacaagggcctgatgggaatc
gcgaccgtgacgggcaacggcgctcaggggcgtaaggtggatggcatcaagaagctcctt
gccgccgccgacgcaaacaacaccggcaagatcgacatcaacaaggataaaggcgggccg
agcgaagcgaagtacctggttcgttttctcgagggcaagctgagactgggcttggccgag
aagacggtcatcgtttcgctcgcgcaggccatggtggcgcacgaggcggctcagaagggc
acggtgccgagcaccgccgacatggagcagggagaagcgcttctcaagacggtgtacagc
gagctgccaagctacgatgtcatcatcccggcgatggtggagcacggcatccagaacctc
aaggagcactgcaagctgcgaccgggcgtgccgctcaagcctatgttggcgaaacccacc
aaggccatcaccgaggtgctggacaggttcgaagggcagacgtttacttgcgagtacaag
tacgacggcgagcgcgcgcaaatccactacgtcgccaaggacaccaacgaggagctcagc
cagtcggccgtcggcgcgtccaaggaggtcggcaaaggcgtggcggccatcttttcgagg
aactcggaagacctgtccaagaagtaccccgatatcctcgagaagctgcccacttgggtc
aacgaggacaccaagagcttcgtcctcgattgcgaatcggtggcgtgggacgtcaaggag
aagaaggtcctgccgttccagcagctcatgacgcgcaagaagaaggacgtaaaggctgag
gatatcaaggtcaaggtgtgcgtctttgccttcgatcttctctacctcaacggcgagccg
gtcgtgcaaaggtcgctcagggagcgccgtgagctgctgcacaaggcattcaagcccgtc
gagggcgagtttgcgtttgccacggcgatgaacggccaggagctggatgagatccaggcc
tttctcgaagagtcggtcaaggcgtcgtgcgaggggctgatggtcaagatgttggacggc
gaggagagcgggtacgagcccagcaagcggagcaggaactggctcaagatcaagaaagac
tacctctccggcgtgggcgactcccttgaccttgtcgtcctgggtgcgtatcatggcaag
ggcaagcgcacgtccgtctacggcgcattcctcctggcctgctacaacccgggtaccgat
acgtacgaaaccgtttgcaacatcggcacgggcttcagcgaggcggtcctcgaggagctg
tatgcccagctgtcggagattgtcattgaccgccccaagcccttctacgcgcacagctcg
ggaggccagcaccagcccgacgtctggttcgagccgcgctacgtgtgggaggtcaagacg
gcggatttgacgctcagcccacggtacaaggcaggaatgcgcgagggggtggatccgagc
ggcgaaaagggaattagcttgcggttcccaaggttcatccgggtgagagatgacaagaag
ccggatgaggccaccacgagcaggcaggtggcggagatgtatcggaagcaggagagcgtg
gcgaacagtaagggcccagcggtggatgatgattttgagtattag

DBGET integrated database retrieval system