KEGG   Remersonia thermophila: 98122031
Entry
98122031          CDS       T10833                                 
Symbol
VTJ83DRAFT_1249
Name
(RefSeq) hypothetical protein
  KO
K14311  nuclear pore complex protein Nup188
Organism
rthe  Remersonia thermophila
Pathway
rthe03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:rthe00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    98122031 (VTJ83DRAFT_1249)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rthe03019]
    98122031 (VTJ83DRAFT_1249)
Messenger RNA biogenesis [BR:rthe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     98122031 (VTJ83DRAFT_1249)
SSDB
Motif
Pfam: Nup188_C Nup188_N-subdom_III Nup188_SH3-like Nup188_N
Other DBs
NCBI-GeneID: 98122031
NCBI-ProteinID: XP_070870602
JGI: Remth1_1249
LinkDB
Position
1:complement(join(4489668..4490663,4490726..4494773,4494864..4494934))
AA seq 1704 aa
MATVTDRTYFPPLDQCLNSDKIILSWRIVASSLNDIAHDRLASAAVSAFLRDAYVHQLLR
DPTKVFEPPTSQSKLDFETKTGAINVVPSPSDPYDLDTIKKDALWLSKALNVSEVAALRV
VLIEFQSRAHSHLTGPMSTQDVANIQEAAGVGDAQASAVLALVSVASAVDAESIWAEFET
EACRRQRLLATYLSERRSFVAVADALLAFLLHSRLSGSPVGLKQLRADILRDAFSFDDSA
DVPDTTLLDALAPTYMRTLEDCFRRTQMLPESLTPDVVTEQLEVDWVRTAAAEAVHAMSL
IFQILDLGASIFAPPALVTQWFGLMDTSEFFESVGGAYDPIAELVMPLRSLVAVISLKLL
NIDRALLYLDQDVDLLDTEDPYLASSDALNQIHTTIAAAAAAGLVTSLPVVFAWSLIVHQ
MHLGYQERAERRDLLQNQRAQAGFELEYEPSGRQRRNSAGSIVSIEASSYDVFLVSQQLE
RNIEPAEAMARVATSRGQVYDVMTEMAVCLGAGQASAFRPVLGARARLVFQDLLKRSAHY
VGYQAEPLACLLALLAGGAQFWDLSPEPPSSRSVLDLHARMLTDDALNLAYTSQSQNRFP
YEFLPFASLCRILSAALISDRETSETITSLLVKTPSLTVDWDPRWDRSYELVFEEDNTNS
FRLTRDIDLFDTTAKSNRRFQPEERCTIPAGTYGRFVTDAGRIAKLEFEHSALAVLGKRL
EVHLAPDTFDTGLGLLGPDELVETISLLSTVVRVEALKSSKADPDAGESILAEIGRLLSP
GRDIISIVCDTLDIVIEEELANLDGPKIALLTSCVQFLYAVLPIRPGRVWAYMARTPLIS
GDTRSGRLSRITATLDVFAERFDLLLAAVKLFSALVDSAVTSSVQRRTAAAANGGRRGDE
NPWVGASDKIVSRVSLSIAQTVIDVFESSTTWRFPSELDRSVLMRDIVDILQRLVASTHS
VGSTDAPKSLTGPLLPAAGHVIESFLSASSSPLRFQPLLATLLAAIQLPDSTLYHRRTRI
VSERLTSALTFATTLLRVADFLNQDCSVVQTQLFKSAAVIARLPAVKHSFRIPVISLLST
LVETAGKSSGEPPSLLGYLGPQLSRSFIQIASQLDKPFDRIPEVVSTWKFFSTILRNRQQ
WMANCLLTGKTPREALKGDIKISQLTAGSVLSTAIAKLRSIKAISSQESLAVLDFFTSAQ
NYWPWTIIAMQKDRGFLDDLRSYVRELKVPAVVAKADPAEACYQARVAAYIAETFAMQLY
HLRQMRREQPFAEQVVNDLDYFLRAGVAVADYNSSLHANFARNFAKRYPGCSVDDFKRTL
LAPRDLGPQYYYALDIAEAMLGHDAGWAGSKHNGFRREMETANLNLSLVEAEVALFHAWE
YLLLELSVCLLPKNQTVAKQMLQVAEQCLDSNQRPQPPENIFVMLAHSRASLALTLLQRL
ADSALLPRDITSLLSLVTATINGVEKPWSKAQAPYFRTLLKILFVTLRGAKHSSNSAPAA
KPGPESPVAVTQLVLTTLDRIVGRSLRSLAALVHEPDSPTTPEDLALVTAILQACLSVPG
IEQCQVEILNIMSSHEVLQVATALFSWADRIADKGDPVYGELALLLLLELSALPALAEQI
ACDGVLGHLTSANLAGFMRRSNVGPFSENAGAARCYAIWAKGVLPLLLNVLGALGATVAP
EVAFVLNQFPGLVRASAQRIEAPA
NT seq 5115 nt   +upstreamnt  +downstreamnt
atggctaccgtgactgatagaacctattttccgccgctggatcagtgcctgaacagcgac
aagatcatcctctcgtggaggatagtcgcctcctccctcaacgatatcgcacacgaccgc
ctcgccagcgccgccgtctcggccttcctccgcgatgcctacgttcaccagctccttcgg
gacccgaccaaggtcttcgagcctcccacgagccagtccaagctagactttgagaccaag
acgggcgccatcaacgtcgtcccctcccccagcgacccctacgacctcgacaccatcaaa
aaggatgcgttatggctcagcaaggcgctcaacgtcagcgaggtcgccgccctgcgtgtc
gtcctcatcgagtttcagtcgcgcgctcatagccacctcacggggcccatgtccacccag
gacgtcgccaacatccaggaggcggctggcgtcggcgatgcccaggcttcggccgtcctg
gctctggtcagcgtggcctccgccgtcgacgccgagtccatctgggcagagttcgagacc
gaggcctgccgccgccagcgcctgctggccacctacctcagcgagcgtcggtccttcgtc
gccgtcgccgacgccctgctcgctttcctgctgcactcgcgcctgtccggctcccccgtc
ggcctgaagcagctgcgcgccgacatactccgcgacgccttttccttcgacgacagcgcg
gacgtgcccgacaccaccctgctcgacgccctcgccccgacgtacatgcgcaccctggag
gactgcttccgccgcacccagatgctccccgagtccctgaccccggacgtggtgacggag
cagctcgaggtggactgggtcaggaccgccgccgccgaggcggtccacgccatgtcgctc
atcttccagatcctggacctcggcgcctccatctttgcgcctcccgcgctcgtgacccag
tggttcggcctcatggacacgagcgagttcttcgagtccgtcggcggcgcctacgatccc
atcgccgagctcgtcatgccgctgcgcagcctggtcgccgtcatctcgctgaagctgctc
aacatcgaccgggccttgctgtacctggatcaggacgtcgacctcctcgacaccgaggac
ccttacctcgcctcttccgacgccctcaaccagatccacaccaccattgccgctgccgcc
gccgccggcctggtcacgtcgctgcccgtcgtcttcgcctggtcgctcatcgtccaccag
atgcacctgggctaccaggagcgcgccgagcgccgcgacctgctgcagaaccagcgggcc
caggccggcttcgagctcgagtacgagccctccggccgccagcggagaaactcggcaggc
agcatcgtctccatcgaggcctcgtcctacgacgtcttcctcgtctcccagcagctcgag
aggaacatcgagcccgccgaggccatggctcgcgtcgccacgtcccgcggccaggtctac
gacgtgatgaccgagatggccgtgtgcctgggcgctggccaggcgtcggcgttccgtccg
gtccttggcgcccgcgcccgcctcgtcttccaagacctcctgaagcgcagcgcccactac
gtgggctaccaggcggaacccctggcctgcctcctcgccctcctggccggcggcgcccag
ttctgggacctgtcgcccgagcctccctccagccggtccgtgctggacctccacgcccgc
atgctgaccgacgacgccctcaacctcgcctacacctcgcagtcgcagaaccgcttcccc
tacgagttcctccccttcgcctccctctgccgcatcttgtcggccgcattgatctcggac
agggaaacctccgagaccatcacgtccttgctggtcaagacgccgagcctcaccgtcgac
tgggacccccggtgggaccggtcctacgagctggtgttcgaggaggacaacacaaactcg
ttccgccttacgcgggacatcgacctgttcgacacgaccgccaagtccaaccgccgcttc
cagcccgaggagaggtgcaccatcccggccggcacctatggccgcttcgtcaccgacgcc
ggccggatcgccaagctcgagtttgagcattccgccctcgccgtcctcggaaagcgcctc
gaggtccatctcgcgccggacaccttcgacaccggcctgggcctcctgggaccggacgag
ctggtcgagaccatctcgctcctgtcgacggtggtacgcgtcgaggcgctcaagtcgtcc
aaggcagaccccgacgccggcgagagcatcctggccgagatcggccgcctgctctcgccg
ggccgcgacatcatcagcatcgtctgcgacacgctcgacatcgtcatcgaggaggagctt
gcgaacctggacggccccaagatcgccctcttgacctcgtgcgttcagttcctgtacgcc
gtgctgcccattcgcccgggccgcgtttgggcctacatggcccgaacgcccctcatcagc
ggcgacacccgctccggccgcctgtcgcgcatcacggccaccctggatgtgtttgccgag
aggttcgacctgcttttggccgccgtgaagctgttctcggccctcgtcgacagcgccgtg
accagcagcgtgcagcggcggacggcggcggcggcgaacggcgggcgcaggggcgacgag
aacccgtgggtgggtgcttccgacaagatcgtctcgcgcgtgtcgctctccatcgcccag
accgtgatcgacgtgtttgagagctcgaccacctggaggttcccgtccgagctcgaccgc
agcgtcctcatgcgcgacatcgtcgacatcctgcagaggctcgtcgcctccacgcacagc
gtgggctcgacggacgcgcccaagagcctgacgggcccgctcctgcccgcggccggccat
gtcatcgagagcttcctgtccgcgtcatcgagccccctgcgcttccagcccctcctggcc
accctgctggcagccatccagctccccgactcgaccctctatcaccgccggacccgcatc
gtgtcggagcggctcacctcggcgctcaccttcgccaccacgctcctgcgcgtcgccgac
tttttgaaccaggactgcagcgtcgtccaaacgcagctcttcaagtcggccgccgtcatc
gcgcggctgccggccgtcaagcactccttccgcatccccgtcatctcgctcctcagcacg
ctcgtcgagaccgccggcaagagcagcggcgagcctccgtcgctcctcggctacctgggg
ccgcagctttcgcgctccttcatccagatcgcgtcccagctcgacaagcccttcgacagg
atacccgaggtggtgagcacgtggaagttcttctccaccatcctgcggaaccgccagcag
tggatggccaactgcctgctcacgggcaagacgccgcgcgaggccctcaagggcgacatc
aagatctcccagctcaccgccggctccgtcctgtcgacggccatcgccaagctgcgctcc
atcaaggccatctcgagccaggagagcctcgccgtgctcgacttcttcacgtcggcccag
aactactggccctggaccatcatcgccatgcagaaggaccgcggcttcctggacgatctg
cggtcctacgtgcgcgagcttaaggtccccgccgtcgtggccaaggcggatccggccgag
gcgtgctaccaggcgcgcgtcgctgcctacatcgcagagacgttcgccatgcagctgtat
cacctgaggcagatgcgccgcgagcagccctttgccgagcaggtggtgaacgacctcgac
tactttttgcgggccggcgtggccgtggcggactacaactcgtcgctgcacgcaaacttt
gcccgcaactttgccaagcgatacccggggtgctcggtcgacgacttcaagagaaccctg
ctggccccgcgcgatcttggtccccagtactactatgcgctggacattgccgaggccatg
ctcggccacgatgccggctgggccgggtccaagcacaacggattccggcgcgagatggag
acggccaacttgaacctgtcgctcgtggaggctgaagtggcgctcttccacgcttgggag
tacctgctcctcgagcttagcgtttgtctgctgcccaagaaccagacggtcgccaagcag
atgttgcaagtggccgagcagtgcctggattccaaccagcggccgcagccgcccgagaac
atctttgtcatgctcgcgcactcgcgggcgagcctggccttgacgctcctccagcggctc
gccgacagcgcgctgctgcccagagacatcacatcccttctctctctcgtcaccgccacc
atcaacggcgtcgaaaagccctggagcaaagcccaggccccctacttccgcaccctgctc
aagatcctgttcgtcacgctccgcggggccaagcactcgagcaactcggcacccgccgcc
aagcccgggcccgaaagcccggtggccgtcacccagctcgtcctcaccaccctcgaccgc
atcgtcggccgctccctgcgcagcctcgccgcgctcgtccacgaacccgactcccccacc
acccccgaggacctcgccctcgtcacggccatcctgcaggcctgcctcagcgtgccgggg
atcgagcaatgccaggtcgagatactcaacatcatgtcctcgcacgaggtgctgcaggtc
gcgacggcgctcttctcgtgggccgaccggatcgccgacaagggcgaccccgtgtacggc
gagctggcgctgctgctgctgctcgagctgtcggcgctccccgcgctggcggagcagatc
gcctgcgacggcgtgctggggcacctgacgagcgccaacctggccggcttcatgcgccgg
tccaacgtcgggcccttttcggagaacgcgggcgcggcgcggtgctacgccatctgggcc
aagggcgtgctgccgctgctgctcaacgtgctgggggccctcggggcgacggtcgcgccc
gaggtcgccttcgtgctcaaccagttccccggcctcgtgcgcgcgtcggcccagcgcatc
gaggccccggcatga

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