Remersonia thermophila: 98122057
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Entry
98122057 CDS
T10833
Symbol
VTJ83DRAFT_1272
Name
(RefSeq) hypothetical protein
KO
K14962
COMPASS component SWD2
Organism
rthe Remersonia thermophila
Pathway
rthe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
98122057 (VTJ83DRAFT_1272)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98122057 (VTJ83DRAFT_1272)
03036 Chromosome and associated proteins [BR:
rthe03036
]
98122057 (VTJ83DRAFT_1272)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
98122057 (VTJ83DRAFT_1272)
Chromosome and associated proteins [BR:
rthe03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
98122057 (VTJ83DRAFT_1272)
COMPASS/SET1 complex (yeast)
98122057 (VTJ83DRAFT_1272)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
98122057
NCBI-ProteinID:
XP_070870625
JGI:
Remth1_1272
LinkDB
All DBs
Position
1:complement(join(4568704..4569473,4569532..4569766,4569827..4569952))
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AA seq
376 aa
AA seq
DB search
MDIDDAPPATATPSFNITRTLGANVPSTTPIHEVIASFRPTKLFQRDDIKEGRPRPYVLS
IDFDDPGELCMTSESDETIQIYNVKEGRHDKSLLSKKYGVKLARFTHTSSSIIYASTKQN
NAIRYLATHDNSFIRYFEGHEGSVTDLALHPGADNFISCSVDDTALIWNIGTKQWIGKLF
LNAPYLSAWDPSGNVFAIASLHGGSLLLYDFRNYEKGPFNVFDVLQATRSGPIEPEWAFQ
GWTKLEFSNDGKHILLGSRGDGHFLLDAFDGSLKAYLKKPGAGTNRRAVGEPESVGNAEN
SGDCCFAPDGRYVLSGAKSDLLVWDTLQAPGSDKVLKPAHVLEEKRETAVVAFNPRYNML
ATADQDLMFWVPDPNQ
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggacattgacgatgcgccgcccgcaacggcgactccatccttcaacattacgcgaacc
cttggcgcgaacgtgcccagcaccacgcccatccacgaggtcatcgcgtccttcagacca
accaagctcttccaacgggatgacatcaaagaaggaaggccccggccctacgtcctgtcg
atcgactttgacgaccccggcgagctctgcatgacgagcgagagcgacgagacgatccag
atctacaacgtcaaggaaggccgccacgacaaaagcttgctcagcaagaagtacggcgtg
aagctggccaggtttacccacaccagctccagcatcatctacgcgagcacaaagcagaac
aatgcgatccggtacctggcgacgcacgacaattccttcatacggtactttgaaggccac
gagggctccgtgaccgaccttgcgttgcatccgggcgccgacaatttcatctcgtgcagc
gtcgacgacacggcgttgatctggaacatcggcaccaagcagtggatcggcaagctcttc
ctcaacgccccgtacctttcggcatgggacccgtccggcaacgtgtttgctatcgcgtcg
ctgcacggcgggagcctgctcctctacgacttccgcaactacgaaaaggggccgtttaac
gtcttcgacgtgctgcaggccacccgcagcgggccgatcgaacccgagtgggctttccag
ggctggaccaagctggagttctcaaacgacggcaagcacattctgctggggtcgcgcgga
gacggccacttcctcctcgacgcgttcgacgggagcctgaaggcgtacctgaagaagccg
ggcgccggcacgaaccgccgagcggtcggggagccagagagcgtcggcaacgccgagaac
agcggcgactgctgcttcgcgccggatggccggtacgtcctgagcggggccaagtcggat
ctgctcgtgtgggacaccctgcaagctccagggagcgacaaggttctcaagccggcgcat
gtcttggaggagaagcgggagacggccgtggtggcgttcaacccgcgctacaacatgctg
gccacggcagaccaagacctcatgttttgggtgcctgacccgaaccagtaa
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integrated database retrieval system
