Remersonia thermophila: 98122183
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Entry
98122183 CDS
T10833
Symbol
VTJ83DRAFT_1386
Name
(RefSeq) hypothetical protein
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
rthe Remersonia thermophila
Pathway
rthe03040
Spliceosome
rthe04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
98122183 (VTJ83DRAFT_1386)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
98122183 (VTJ83DRAFT_1386)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rthe03041
]
98122183 (VTJ83DRAFT_1386)
04121 Ubiquitin system [BR:
rthe04121
]
98122183 (VTJ83DRAFT_1386)
03400 DNA repair and recombination proteins [BR:
rthe03400
]
98122183 (VTJ83DRAFT_1386)
Enzymes [BR:
rthe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
98122183 (VTJ83DRAFT_1386)
Spliceosome [BR:
rthe03041
]
Complex B
Other components
Prp19 complex
98122183 (VTJ83DRAFT_1386)
Complex C
Prp19-CDC5 complex
98122183 (VTJ83DRAFT_1386)
Ubiquitin system [BR:
rthe04121
]
Ubiquitin ligases (E3)
U-box type E3
98122183 (VTJ83DRAFT_1386)
DNA repair and recombination proteins [BR:
rthe03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
98122183 (VTJ83DRAFT_1386)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Prp19
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_WDR19_1st
WDR55
Beta-prop_Vps41
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_TEP1_2nd
WD40_RFWD3
Beta-prop_WDR36-Utp21_1st
PEP5_VPS11_N
Beta-prop_ACSF4
Beta-prop_EML
zf-Nse
WD40_like
Beta-prop_SCAP
LYTB
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
98122183
NCBI-ProteinID:
XP_070870739
JGI:
Remth1_1386
LinkDB
All DBs
Position
1:complement(join(5087322..5087797,5087872..5088329,5088400..5088850,5089015..5089059,5089143..5089155))
Genome browser
AA seq
480 aa
AA seq
DB search
MLCAISGEVPEEPVVSKKTGTVFEKRLILKYIEENGKEPGTDEELDPEDLLPLKTSRVVR
PRPPNFTSLPSLLKAFQDEWDALVLETYNTREQLARTREELATALYQHDAAIRVIARLTK
ERDEARDALAKITVAPTAAGPSASNGDAMAVDNEGLPEHLVQHVNELQQQFMKGRKKRPV
PSGWATADQVAALQQVAYADLNVAQASSLDTESDYAAVGGLDGKLDVYSVPANKVERTLD
VGEPVTATAWTGSKVIVGTAKGAVKVLDGGHETASFATHAGAVTGLAVHPGGRILASVGV
DKSYVLYDLETLEKVSRVYTDAALTACAFHPDGNLFGAGTQAGSIKIFQTATGEQAESFA
LGSPVQALVFSENGFWFAASGKGQATTVIFDLRKSGDAARARELATGEALGLAWDYTGQY
LATAGSQGVTVQMYTKSSKQWSEPLRTSSSAVALRWGDEAKRLVVVSREGVVSVLGAKEE
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgcgccatttcaggagaggttcccgaggagcccgttgtctccaagaagacgggc
accgtcttcgaaaagcgcctcatcctcaagtacatcgaggagaacggcaaagagcccggc
accgacgaggagctcgaccccgaagacctgctcccgctcaagacgagccgcgtcgtgcgc
ccgcgcccgcccaacttcacctcgctcccgtcgctgctcaaggccttccaggacgagtgg
gacgccctggtcctcgagacgtacaacacgcgcgagcagctggcccgcacgcgcgaggag
ctcgccaccgccctgtaccagcacgacgccgccatccgcgtcatcgcccgcctgaccaag
gagcgcgacgaggctcgcgatgccctggccaagatcaccgtcgccccgaccgccgccggc
ccctcggcgtccaacggcgacgccatggccgtggacaacgagggcctgcccgagcacctc
gttcagcacgtcaacgagctgcagcagcagttcatgaagggccgcaagaagcgccccgtc
ccctcgggctgggcgaccgccgaccaggtggccgcgctgcagcaggtcgcctacgccgac
ctcaacgtcgcccaggcctcctccctcgacaccgagtccgactacgcggccgtcggcggc
ctggacggcaagctcgacgtctactcggtgccggcgaacaaggtggagcggacgctcgac
gtgggcgagcccgtcacggccacggcgtggacgggcagcaaggtcatcgtcggcacggcc
aagggcgccgtcaaggtgctggacggcgggcacgagacggcctcgttcgccacgcacgcc
ggcgccgtgacgggcctggcggtgcaccccggcggccggatcctggcgtcggtgggcgtg
gacaagagctacgtcttgtacgacctcgagacgctcgagaaggtgtcgagggtgtacacc
gatgctgccctcaccgcctgcgccttccaccccgacggcaacctctttggcgccggcacg
caagccggctccatcaagatcttccagacggccacgggcgagcaggccgagtcctttgcg
ctcggctcgccggtccaggcgctcgtgttttccgagaacggcttctggttcgccgcgtcg
ggcaagggccaggcgacgacggtcatctttgacctgcgcaagtcgggcgacgcggcccgg
gcccgcgagctcgccacgggcgaggccctggggctcgcctgggactacacgggccagtac
ctggccacggcgggcagccagggggtcacggtgcagatgtacaccaagagcagcaagcag
tggtcggagccgctgcgcacgagcagctcggcggtggcgctgcggtggggcgacgaggcc
aagaggttggtggtggtgagccgggagggcgtggtttcggtgctgggggccaaggaggag
tga
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