Remersonia thermophila: 98122396
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Entry
98122396 CDS
T10833
Symbol
VTJ83DRAFT_1578
Name
(RefSeq) hypothetical protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
rthe Remersonia thermophila
Pathway
rthe03018
RNA degradation
rthe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
98122396 (VTJ83DRAFT_1578)
09123 Folding, sorting and degradation
03018 RNA degradation
98122396 (VTJ83DRAFT_1578)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98122396 (VTJ83DRAFT_1578)
03041 Spliceosome [BR:
rthe03041
]
98122396 (VTJ83DRAFT_1578)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
98122396 (VTJ83DRAFT_1578)
mRNA degradation factors
5'-3' decay
Lsm complex
98122396 (VTJ83DRAFT_1578)
Spliceosome [BR:
rthe03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
98122396 (VTJ83DRAFT_1578)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
98122396
NCBI-ProteinID:
XP_070868118
JGI:
Remth1_1578
LinkDB
All DBs
Position
2:complement(join(449628..449758,449878..449949,450019..450235))
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AA seq
139 aa
AA seq
DB search
MADRGGHRGRGRGGRGGPGGGRGGHQHQHSSQQQHGSGGQGQGQEKPKKENILDLKKYMD
KRVTAKFNGGREVTGVLKGYDALMNLVLDDVEETLRDDEGNEVTRPLGLVVVRGTLLVML
SPVDGSEVIANPFLQAQEE
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggggaggacaccgcggccgtggcaggggaggacgcggcgggcctggcggc
ggtcgtggcgggcaccaacatcagcacagcagccaacaacaacacggctccggcgggcag
ggccagggccaggagaagcccaaaaaggaaaacattctggatttgaaaaagtacatggac
aagcgcgtcaccgccaagttcaacggcgggcgcgaagtcaccggcgtcctcaaaggctac
gacgccctgatgaacctggtcctggacgacgttgaggagaccctccgcgacgacgaaggc
aacgaagtcacccgcccgctcggcctggtggtcgtccgcggcaccctcctcgtcatgctc
agccccgtcgacggcagcgaggtcatagccaacccgttcctgcaggcccaggaggagtaa
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integrated database retrieval system
