Remersonia thermophila: 98122471
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Entry
98122471 CDS
T10833
Symbol
VTJ83DRAFT_1645
Name
(RefSeq) hypothetical protein
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
rthe Remersonia thermophila
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rthe03021
]
98122471 (VTJ83DRAFT_1645)
Enzymes [BR:
rthe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
98122471 (VTJ83DRAFT_1645)
5.6.2.5 RNA 5'-3' helicase
98122471 (VTJ83DRAFT_1645)
Transcription machinery [BR:
rthe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
98122471 (VTJ83DRAFT_1645)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SEN1_N
AAA_11
AAA_12
SEN1_barrel
AAA_19
AAA_30
UvrD-helicase
Viral_helicase1
ANC1_spectrin
DEAD
She9_MDM33
RNR_Alpha
Motif
Other DBs
NCBI-GeneID:
98122471
NCBI-ProteinID:
XP_070868185
JGI:
Remth1_1645
LinkDB
All DBs
Position
2:complement(join(696594..696662,696731..696937,697030..702580,702681..703033))
Genome browser
AA seq
2059 aa
AA seq
DB search
MENNALLQQAVDWHQAFEDRPPDAHLCCPRVDEDDMANYDEPDEPEEEASVADKAKRIKA
FEERFHNAYNLSILMGLGKETAGPWLDNWKEAVESCLTRCDSCVRNWHRQREQYLSQLPF
EREQVEYMRMKLAEFDKERISAGLKRARAILEEHGPMNTAKLVERDMPAVLALFEALCSI
EYLAQPENREDFNYVFEKTQQKKPLRMQGGIIPTMTYFLFDDDSASSPYRRKFAEGAWEK
KPPGSLTDQEWDWAICPILTTAIQRVSLARGMPSPDRICRFWNAFSYLLRSLSEKQIINA
LRAMEVSPSVYMLAIEHLATDSDEALAVVLNSIRALMEKSPSAFWAALVPATPSHLVEEV
IKSPALRRFLNKSLMLDMMVEQGKNNVPSLAAFARSLIRSLPSLQRSDVCESLLRYLFDT
LRRDPNVDRAAQATCTLAGLVALSESLDGYLHQQVAFDTGTALIMVNQLINRVVQYGDVI
KTAAGLKPEDTFNVGISDTAMAIIHSALALDARATEIEWEALIAETPVQDAVKRDSGGLW
ESFLEMLWYNQLGHMNLAKAMLMATLRLRSIERFIPKRKEQLKLEQHKFNQRYQQQTAAV
GKMLNRLSDFKQEDLAKFCSERQSLTIHPIVSSLIHGEDPIREAGFELLKAITDEYSPSE
AVTKMLERYFAPFLDAFTEAVSKVTAAQDDSSPWSHMLPILKCSELVLNGLCDPSAGQLR
RRTLTPEEHFAVKRWWECAWRTVEHSFRMMRKWHEKVDKKIMEDFCRDVMELANKLFAQD
GVMASALSQHSTDDAGANGEAASKEAMKIVLEPPRKYSFSLTDMLQLRDKYLIAGIIEVI
KKLLARLDQNGMALPPKTVAHLMNMLKKRHLSTGRHDYVQKTNMTDEQRIELLKALGEDA
VIEEQFMGGAKPGLKEAKERDRAMRQSTLDFSKASWGGLGAPAKTRAPEAAPAADKKAGS
ALQAKLGLEAAKPQQQPAKLSPQAIAAQQMSIKEARAREKAEKAKRDAEAIAKARALRAP
PKTVPGEGSGLQGIAGVRGKDHAPAVKDEIMVGSSSEDGSDDDSDEDERIALKAKEKTKG
LNEAERRRLLMLAEKRGPVKKMKLQRSAKDMRARLIPPMDVLHQAILEWDIFYEGNDPPN
GYRCDRVSDTYPDPQSYKQTFFPLLINEAWRSFVTAKDEATSRPFGIKVISRMTVDKFME
VTASVPAPVSKDRGLAEGDIVIISKGEDPLGQPQELHCLSRIWKTTYKKDTVEVVYRLNA
KGNQILPVLLPGAEFHVVKITNMTTIEREYAALESLQYYDLMDEVLKAQPSPMLTFGDEA
VRGVMDNYHLNPGQARAILNAKENDGFTLVQGPPGTGKTKTIVAMVGCLLTGVLKPSAGA
VALARPAAASASAGQAPAKKLLVCAPSNAAVDELVLRLKSGVKTMNGTFHKIEVLRLGRS
DAINAAVKDVTLDELVKARMDAEINNITGPSDREKLHQEAGQLKEKIAELRPQLEAARAS
ENRNFAMKLQREFDELKRRQAHIGAQIDASKASGNTFAREVEIKRRQIQQEILDKAQVLC
ATLSGSGHEMFKNLNVEFETVIIDEAAQCVELSALIPLKYGCSKCILVGDPKQLPPTVLS
QSAARYGYDQSLFVRMQKNHAKDVHLLDMQYRMHPEISKFPSREFYEGLLQDGADMGKLR
TQPWHQSELLGPYRFFDVKGSQERGPKNQSLVNEEELKVAMQLYRRFRTDYAKADLKGKI
GIITPYKAQLLRLRQRFAEKFGENITEEIEFNTTDAFQGRECEIIIFSCVRASPTGGIGF
MTDIRRMNVGLTRAKSSLWILGDSRALVQGEFWAKLIEDAKRRDRYTSGNILSLLSQPGR
KALPASPAPQPTDEDAVMQDAPAVSAGKAAAPAQQQGSGPAHSYPPDETAVPPTLPYRGE
GIGGINERGEVVSMMPRAGGAPIIQSTAGPAGKKRKGDGEDGQANPKKMQHGPDKHLNKP
PASAKPLKHLKPPVDPSAMQVLGLAPPERAPPQPNPPPQNRPPHGGPRPNQGPNQPRGPM
VVPKRGAPDPFIRRKPGKR
NT seq
6180 nt
NT seq
+upstream
nt +downstream
nt
atggagaacaacgcccttcttcagcaggcggtggactggcaccaggccttcgaggaccgc
ccgcccgacgcccatctctgctgtcccagggtggacgaagacgacatggccaactacgac
gaacccgacgaaccggaagaggaggcgtcggtggccgacaaggccaagcgcatcaaggcg
ttcgaggagcgctttcacaacgcctacaacctgagcatcctcatgggcctcgggaaggag
accgccggcccttggctcgacaactggaaagaagccgtcgagtcgtgcctcacgaggtgc
gattcctgcgtcaggaactggcaccggcagcgcgagcagtacctgagccagctgcctttc
gaaagggagcaggtcgagtacatgcgcatgaagcttgccgagttcgacaaggagagaatc
agcgccggcctcaagcgggctcgcgccatcctcgaggagcatggccccatgaacacggca
aagctggtcgagcgcgacatgcccgccgtcctggccctcttcgaagccctttgcagcatc
gagtacctcgcccagcccgagaaccgcgaagacttcaactacgttttcgaaaagacgcag
caaaagaagcccctgcggatgcagggcggcatcatcccgaccatgacctacttcctcttc
gacgacgattccgcctcgtcgccgtacagacgcaagttcgccgagggggcctgggagaag
aaacccccgggctccctgacggaccaggaatgggactgggccatctgccccatcttgacc
acggcgatccagcgggtgtcgttggcccgggggatgccgtcgccggatcgcatctgccgg
ttctggaacgccttctcctacctccttcggtccctgagcgagaagcaaatcatcaacgcc
ctgcgggccatggaggtgtccccgagcgtgtacatgctggcgatcgagcacctcgccacc
gactcggacgaggccctggcggtcgtcctcaacagcatccgcgccctcatggagaagtcc
ccaagcgccttttgggcggcgcttgtcccggccaccccgagccacctcgtcgaggaggtc
atcaagagccccgcgcttcgccgctttctcaacaagtcgctgatgctggatatgatggtc
gagcaagggaagaataacgttccgtccctggccgcgttcgcgaggtccttgatccgctcg
ctgccgtccctgcagcggtccgacgtgtgcgagtctctcctgcgctacctcttcgacacc
ctccggagggaccccaacgtcgaccgggccgcccaggcgacgtgcaccctcgcgggcctg
gtcgccctcagcgaatcgctcgatggctaccttcatcagcaggttgccttcgacaccggc
accgccctcatcatggtgaaccagctcatcaaccgcgtggtgcagtacggcgacgtcatc
aagaccgccgcgggcctcaagcccgaggacaccttcaacgtcggcatctccgacaccgcc
atggccatcatccattcggcgctcgcgctggacgcccgagccaccgagatcgagtgggag
gcgctcatcgccgagacccccgtccaggatgccgtcaagagggactcgggagggctgtgg
gagtccttcctcgagatgctttggtacaaccagctcgggcacatgaacctggccaaggcc
atgctcatggcgaccctgcgcctccgcagcatcgagaggttcatccccaagcggaaagag
cagctcaagctggagcagcacaagttcaaccagcgataccagcagcagacggccgccgtc
ggcaagatgctcaaccggctgtccgacttcaagcaggaggacctggccaagttctgctcg
gagcgccagagcctcaccatccatcccatcgtgtcgtcgctgatccacggcgaagacccc
atccgcgaggcgggcttcgagctgctcaaggccatcacggacgagtactcgccctccgag
gccgtgaccaagatgctggagaggtacttcgcgccgttcctcgacgccttcaccgaggcg
gtcagcaaggtgacggcggcgcaggacgacagcagcccctggagccacatgctcccgatc
ctcaagtgcagcgagctcgtcctgaacggcctctgcgatccttcggccggccagctgcgg
cgtaggacgctcacccccgaggagcacttcgcggtcaagcgctggtgggagtgcgcctgg
cgcaccgtcgagcactcgttccgcatgatgcgcaagtggcacgaaaaggtcgacaagaag
atcatggaggacttttgccgcgacgtcatggagctggccaacaagctgttcgcgcaggac
ggcgtcatggcctcggcgctcagccagcacagcaccgacgacgccggcgccaacggggag
gccgcgtccaaggaagccatgaagatcgtcttggagccgccccggaagtactccttctcc
ctcaccgacatgctccagctgcgcgacaagtacctcatcgccggcatcatcgaggtgatc
aagaagctgcttgcccgcctggaccagaacggcatggccctcccgcccaagacggtcgct
catctcatgaacatgctgaagaagaggcatctctccaccggccgccatgactacgtccaa
aagaccaacatgacggacgagcagcggatcgagctcctcaaggccctcggcgaagacgcc
gtcatcgaggagcagttcatgggcggcgcgaaacccggcctgaaggaggccaaggagagg
gaccgcgccatgcgccagagcaccctcgatttctccaaggcgtcttggggggggctcgga
gcgccggccaagacccgggcgcccgaggccgcgcccgccgccgacaagaaggcgggatcg
gccctgcaggcgaagctcgggctggaggccgccaagccgcagcagcagccggccaagctg
agcccgcaggccatcgccgcccagcaaatgtcgatcaaggaagcccgggcgagggagaag
gccgaaaaggccaagcgcgacgccgaggccatcgccaaagcgagggccttgcgtgctcct
cccaagacggtcccgggggaaggctccggcctgcagggcatcgccggcgtccgaggcaag
gaccacgcgccggcggtcaaggacgagatcatggtcggctcgtcttccgaggacggctcg
gacgacgactcggacgaggacgagcgcatcgcgctcaaggccaaggagaagaccaagggc
ctcaacgaggccgagcgccggcggctgctcatgctcgccgagaagcgcggccccgtcaag
aagatgaagctccagaggtcggccaaggacatgcgcgcgcgtctgatcccgcccatggac
gtgctgcaccaggccatcctggagtgggacatcttctacgaagggaacgacccgcccaac
ggctaccgctgcgaccgcgtctccgacacctacccggaccctcagagctacaagcagacc
ttcttccccttgctcatcaacgaggcctggcgatcgttcgtcacggccaaggacgaggcc
acgtccaggccgtttgggatcaaggtgatcagccgcatgacggtcgacaagttcatggag
gtcacggcgtcggtgcccgcgccggtcagcaaagaccgggggctggccgagggcgatatc
gtcatcatctccaagggcgaggacccgctcggccagccccaagagctgcactgcctgtcg
cgcatctggaagaccacgtacaagaaggacacggtcgaggtcgtctaccgcctcaacgcc
aagggcaaccagatcctgccggtgctgctccccggggccgagttccacgtcgtcaagatc
accaacatgacgaccatcgagcgcgagtacgcggccctggagagcctgcagtactacgac
ctcatggacgaggttctcaaggcccagccctctcccatgctgacctttggcgacgaggcc
gtccggggggtgatggacaactatcatctcaaccccggccaggcccgtgcgatcctcaac
gccaaggagaacgacggcttcaccctcgtccagggcccccccggaacgggcaagaccaaa
accatcgttgccatggtcggctgcctcctgaccggcgtcctcaagccgtccgccggcgcc
gtcgcgctcgcccggcccgcggccgcctccgcctcggcgggccaggctccggcgaagaag
ctgctggtgtgcgcgcctagcaacgccgccgtggacgagctggtgctccgtctgaagagc
ggcgtcaaaacgatgaacggcacgttccacaagatcgaggtgctgcgcctgggccgcagc
gacgccatcaacgccgcggtcaaggacgtcaccctcgacgagctggtcaaggcgcgcatg
gacgccgagatcaacaacatcaccggcccgagcgaccgcgagaagctgcatcaggaggcc
gggcagctcaaggagaagattgccgagctgcggccccagctcgaggcggcgcgcgcgagc
gagaaccgcaacttcgccatgaagctgcagcgcgagttcgacgagctgaagcgccggcag
gcgcacattggcgcgcagatcgacgccagcaaggccagcggcaacacgttcgcgcgcgag
gtggagatcaagcgccggcagatccagcaggagatcctcgacaaggcgcaggtcctgtgc
gccacgctgagcggcagcggccacgagatgttcaagaacctgaacgtcgagttcgagacg
gtcatcatcgacgaggcggcgcagtgcgtggagctgagcgccctgatccccctcaagtac
ggctgctccaagtgcatcctcgtcggcgatcccaagcagcttccgcccaccgtcctgtcg
cagtcggccgcgaggtacggctacgaccagagcttgttcgtgcgcatgcaaaagaaccac
gccaaggacgtgcacctcctcgacatgcagtaccgcatgcacccggaaatcagcaagttc
cccagccgggagttctacgaaggcctgctccaggacggcgccgacatgggcaagctgcgc
acgcagccatggcaccagagcgagctgctcggcccctaccgcttcttcgacgtcaagggc
tcgcaggagcgaggccccaagaaccagtcgctggtcaacgaagaggagctcaaggtcgcc
atgcagctgtatcgccggttccgcaccgactacgccaaggcggacctcaagggcaagatc
ggcatcatcaccccctacaaggctcagctgctgcggcttcggcagcggttcgccgagaag
tttggcgagaacatcacggaggagatcgagttcaacacgaccgacgccttccagggtcgc
gagtgcgaaatcatcatcttttcttgcgtccgcgccagcccgacgggcggcatcggcttc
atgacggacattcgccgcatgaacgtcggtctcacgcgtgccaagtcgtcgctgtggatc
ctcggcgactcccgcgccctcgtgcagggcgagttctgggccaagctcatcgaggatgcc
aagcggcgcgaccgctacacgagcggcaacatcctctcgctgctcagccagcccggccgc
aaggccctgccggcatcgcccgccccgcagccaacggacgaggacgcggtcatgcaagat
gcccccgcggtctcggcgggcaaagccgccgcgcctgcgcagcaacagggatcgggcccg
gcgcattcgtacccccccgacgagacggccgtgccgccgacgctgccgtaccgcggagag
ggcatcggcggcatcaacgaacggggcgaggtggtctcgatgatgcccagggccggcggc
gcgcccatcatccagtcaaccgcgggacctgcgggcaagaagaggaaaggcgatggcgag
gacggccaagccaaccccaagaagatgcagcacgggccggacaaacatctgaacaagcct
ccggcctcggccaagcccctcaaacacctgaagccgccggtcgatccgtcggcgatgcag
gttctcggcctggcccccccggaacgggcgccgccgcagccgaatcccccgccgcagaac
cgaccgccgcacggcggcccccggccgaaccagggccctaaccagccaaggggtcctatg
gtggtgcccaagcgcggcgcgccggatccgttcatccgacggaaaccgggcaagcgttga
DBGET
integrated database retrieval system
