Remersonia thermophila: 98122524
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Entry
98122524 CDS
T10833
Symbol
VTJ83DRAFT_1693
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rthe Remersonia thermophila
Pathway
rthe03013
Nucleocytoplasmic transport
rthe03015
mRNA surveillance pathway
rthe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
98122524 (VTJ83DRAFT_1693)
09122 Translation
03013 Nucleocytoplasmic transport
98122524 (VTJ83DRAFT_1693)
03015 mRNA surveillance pathway
98122524 (VTJ83DRAFT_1693)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98122524 (VTJ83DRAFT_1693)
03041 Spliceosome [BR:
rthe03041
]
98122524 (VTJ83DRAFT_1693)
Enzymes [BR:
rthe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
98122524 (VTJ83DRAFT_1693)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
98122524 (VTJ83DRAFT_1693)
Spliceosome [BR:
rthe03041
]
Complex C
Other components
EJC/TREX
98122524 (VTJ83DRAFT_1693)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
98122524 (VTJ83DRAFT_1693)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
CMS1
Motif
Other DBs
NCBI-GeneID:
98122524
NCBI-ProteinID:
XP_070868233
JGI:
Remth1_1693
LinkDB
All DBs
Position
2:join(834444..834666,835377..835787,835849..836209,836278..836535,836599..836647)
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AA seq
433 aa
AA seq
DB search
MSGEEDLIDYSDDELNNETAPASNGKKGDAAATTQNVDKKGSYVGIHSTGFRDFLLKPEL
LRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSV
LVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKDTHPHIIVGTPG
RLNALVRDKHLRLGNVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLSDE
IKPICRKFMQNPTEHYVDEDTKLTLHGLQQYFIALEEREKNRKLSELLDDLQFNQVIIFV
KSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIE
RINLAINYDMPADADSYLHRVGRAGRFGTKGLAISFVTTEQDKEVLQQIEKRFEVALPEF
PKEGVDASTYMAS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgaggaggatcttatcgactactcggatgacgagctcaacaacgagaccgcc
ccggcctccaacggcaagaagggcgatgccgccgccacgacccagaatgtcgacaagaag
ggctcctatgtcggcatccactcgaccggtttccgtgacttcctgctgaagcccgagctc
ctgcgcgccattgccgactgcggcttcgaacatccgtcggaggttcagcagacatgcatc
ccccaggccatgctgggcggcgacatcatttgccaggccaagtcgggtctcggcaagacg
gccgtcttcgttctgacgaccctccagcaggtcgagcccgtcgccggcgagtgctcggtg
ctggttatgtgccacacccgcgagctcgctttccagatccgcaacgaatacaaccgcttc
agcaaatacatgcccgacatcaagacgggcgtcttctacggcggtaccccgatccagaag
gatgccgaggttctcaagaacaaggacacccatcctcacatcatcgtcggcaccccggga
cgtctgaacgcccttgttcgcgataagcacctgcgcctcggcaacgttcgcatgttcgtc
ctggacgagtgcgacaagatgctcgaccaaatcgacatgcgtcgcgatgtgcaggagatc
ttccgtgccaccccccagcagaagcaggtcatgatgttctcggccacgctctcggatgag
atcaagcccatctgccgcaagttcatgcagaacccgaccgagcactacgtcgacgaagac
accaagttgaccctgcacggtctccagcagtacttcattgcgctggaggagcgggagaag
aaccgcaagctgagcgagctgctcgacgacctgcagttcaaccaggtcatcatcttcgtc
aagagcaccctgcgtgccaccgagctcgacaagctcctgcgcgagtgcaatttcccctcg
atcgccgtccactcgggcgtcagccaggaggagcgtatccgccggtacaaggagttcaag
gagttcaacaagcgcatctgcgtcgccaccgatgtctttggtcgtggtatcgatattgag
cgcatcaacctggccatcaactacgacatgcctgccgatgccgactcctacctgcaccgt
gtcggtcgtgccggtcgtttcggtaccaagggtcttgctatctcgttcgtcaccaccgag
caggacaaggaggtgcttcagcagatcgagaagcgcttcgaggtggctcttcctgagttc
cccaaggagggtgtcgacgcctcgacctacatggcttcgtaa
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