Remersonia thermophila: 98122827
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Entry
98122827 CDS
T10833
Symbol
VTJ83DRAFT_1966
Name
(RefSeq) hypothetical protein
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
rthe Remersonia thermophila
Pathway
rthe03020
RNA polymerase
rthe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
98122827 (VTJ83DRAFT_1966)
09124 Replication and repair
03420 Nucleotide excision repair
98122827 (VTJ83DRAFT_1966)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rthe03021
]
98122827 (VTJ83DRAFT_1966)
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98122827 (VTJ83DRAFT_1966)
03400 DNA repair and recombination proteins [BR:
rthe03400
]
98122827 (VTJ83DRAFT_1966)
Transcription machinery [BR:
rthe03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
98122827 (VTJ83DRAFT_1966)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
98122827 (VTJ83DRAFT_1966)
DNA repair and recombination proteins [BR:
rthe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
98122827 (VTJ83DRAFT_1966)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHS2_Rpb7-N
S1
Motif
Other DBs
NCBI-GeneID:
98122827
NCBI-ProteinID:
XP_070868506
JGI:
Remth1_1966
LinkDB
All DBs
Position
2:join(1847639..1847887,1847960..1848040,1848116..1848285,1848351..1848366)
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AA seq
171 aa
AA seq
DB search
MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKDVEGTCAGDYYIIAIMDTFDVSEGRILP
GSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGPLRLFVSSHLMPDEIQYDA
SATPAQFTNNADIVIEQGTHVRVKIIGLRTEVGEMWAIGSINGDFLGCLQG
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgttcttcctccacaacctcgagcggcgcgtgacgctgcacccgtcctactttggccgc
aacatgcacgagctggtcaccaccaagctggttaaggatgttgagggcacctgcgcgggc
gactactacattattgccatcatggacacgttcgacgtgtccgagggccgtatcctcccc
ggcagcggcctcgctgagttcaccgtcggctaccgtgctgtcgtctggcgcccgttcaag
ggcgaagtgatcgacgccatcacgcaaaccgtgaacccacacggcttcttcgcccaggcc
gggcccttgcggctcttcgtctcctctcacttgatgcccgacgagatccagtacgacgcc
agcgccaccccggcgcagttcaccaacaacgccgacatcgtcatcgagcagggcacgcac
gtgcgagtcaagatcattggtctacgcaccgaggtcggcgagatgtgggccatcggtagc
atcaatggtgatttcttgggttgcttgcaaggataa
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