Remersonia thermophila: 98122861
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Entry
98122861 CDS
T10833
Symbol
VTJ83DRAFT_1997
Name
(RefSeq) hypothetical protein
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
rthe Remersonia thermophila
Pathway
rthe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
98122861 (VTJ83DRAFT_1997)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rthe03041
]
98122861 (VTJ83DRAFT_1997)
Enzymes [BR:
rthe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
98122861 (VTJ83DRAFT_1997)
Spliceosome [BR:
rthe03041
]
Complex A
U2 snRNP components
U2 related factors
98122861 (VTJ83DRAFT_1997)
Complex B
98122861 (VTJ83DRAFT_1997)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
98122861
NCBI-ProteinID:
XP_070868537
JGI:
Remth1_1997
LinkDB
All DBs
Position
2:join(1969150..1969299,1969396..1972842)
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AA seq
1198 aa
AA seq
DB search
MLREGVRRMSVATETETEIETAIEIESETATVTATATATAIDAALAVRMYRRYRDRDRDR
DRDRDYGRDGRDRDSYRWRDRSLDRRDDDYHYRGGSRRDRDRRRSRDRGPDRPRSPDRRG
PRGRDGSRERRSRESSPARRDDGGRPHDRRGDVPSPAHAGPDAQPAKSTPTQAQSEAEKK
AERLRKLQAMKEKHAQKEAKEAAVTAGSTRQLLAEMDQKASGVWTAAAPQAPSSAAPGAY
PGKFDPKAIVKNAKGARAQSPARLGDVKLPVVAAAAAAAAAAATKPFGKIETGAAKDAGL
LPTNRAVSAFGFKAADTQKSAAKRKLDMDDEEVTKRKLVKLPDYVPEKADDAPEADGEAE
EDGEEDLDLLMARNEEDMAEAHRILQERREERIQKEAMAMDVDAEAPNGTAAKEEPAPAA
DAMDVEEKEQMVVVVEEEVDPLDAFMAELEQSAPKGGFGSDAARQKQQGAGSKKAFEPEA
YFNEDDYGYEAENADPASILAMAAKKKKKDIPTIDYSKIELNPIRKNFWVEPQELAQMTE
EEAAELRMELDGIKVSGKNVPRPVQKWSQCGLTQPILDVIASLGYEKPTPIQMQALPVIM
SGRDVIGVAKTGSGKTMAFVLPMLRHIKDQDPVGGDDGPIALIMTPTRELCTQIYSDLLP
FAKALKLRAVAAYGGSAIKDQIAELKRGAEIIVATPGRMIDLLAANSGRVTNLKRATYLV
LDEADRMFDMGFEPQVMKIFQNVRPDRQTILFSATMPRIIDALTKKVLRQPVEITVGGRS
VVAPEITQVVEVLEESKKFVRLLELLGELYKDDDDVRALIFVERQEKADDLLRELLRRGY
GCMSIHGGKDQEDRNSTISDFKKGVCPILIATSVAARGLDVKQLKLVINYDAPNHLEDYV
HRAGRTGRAGNTGTAVTFVTAEQENCATCIAKALEQSGQPVPEKLDEMRKSWREKVKAGK
AKDASGFGGKGLERLDKEREAARLRERKTHKAEGDEEEDEAADAAGAGKKDAAKSLVEAA
ASAIVSRDAARAATAAAPAEAEAAAAVRGGVPVATGKGGALDKAASAISEINARLARAGQ
LRQGQPIDNKGPDAGAFHATLEINDFPQKARWAVTNRTNVAKILEATGTSITTKGSYYPP
GKEPQPGGDPKLYILIEGDTELVVSKALSELTRLLREATIAAAESESRAPIGGRYTIT
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgaaggcgtaaggaggatgagcgtcgcgaccgagaccgagaccgagatcgag
accgcgatcgagatcgagagcgagaccgcgaccgtgaccgcgaccgcgaccgcgaccgcg
atcgacgccgctctcgcagtccggatgtaccgccgataccgtgaccgcgaccgcgaccgt
gaccgcgaccgcgactatggccgcgatggccgggatcgcgactcgtaccggtggagggac
cgctccttagaccgccgggatgacgactaccactaccgagggggctcccgccgcgatcga
gaccgccggaggtcgcgcgaccgcggccccgacaggccccggtctcccgaccgccgaggg
ccgcgagggagagatggcagccgcgagcggaggagccgcgagagctcgcccgcccgccgc
gacgacggcggccgcccccatgaccgccggggagacgtgccctccccggcccatgccggc
cctgacgcgcagccagctaagtctacaccgacccaagcgcagtccgaggctgagaaaaag
gctgaacgactgcgcaagctccaagccatgaaggaaaagcacgctcagaaggaggccaag
gaagccgccgtcaccgccggcagcacccgccagctcctggccgagatggaccaaaaggcc
agcggcgtctggacggccgccgcgccccaggccccctcctcggcggccccgggtgcctac
cccggcaagttcgatcccaaagccattgtcaagaacgccaagggcgccagagcccaatcc
cctgccaggctcggagatgtcaagctgcccgttgtcgctgctgctgctgctgccgccgcc
gccgccgctacaaaacccttcggcaagatcgagacgggtgccgccaaggacgccggtttg
ctcccgaccaatcgcgcggtcagcgcctttgggttcaaagcggccgacacccagaaatcg
gccgccaagcgcaagctggacatggacgacgaggaggtcaccaaacgcaagctcgtcaag
ctccccgattacgtcccggagaaggccgacgacgcgcccgaggccgacggcgaggccgag
gaggacggagaggaagacctggacctcctcatggcccgcaacgaggaagacatggccgag
gcccaccggatcctccaggagaggcgcgaggagcgcatccagaaggaggccatggccatg
gacgtcgacgccgaggccccgaacgggacggccgccaaggaggagccggccccggccgcc
gacgccatggacgtcgaggagaaggagcagatggtggtggtggtggaggaggaggtcgac
cccctggacgccttcatggcggagctcgagcagtcggcgcccaagggcggcttcggctcg
gacgcggcccggcaaaagcagcaaggcgccggcagcaagaaggcctttgagccggaagcc
tacttcaacgaagacgactacggctacgaggccgagaacgccgacccggcctccatcctc
gccatggccgccaagaagaagaagaaggacattccgaccatcgactacagcaagatcgag
ctgaacccgatccgcaagaacttctgggtcgagccccaggagctggcccagatgaccgag
gaggaggcggccgagctgcgcatggagctggacggcatcaaggtgtcgggcaagaacgtg
ccgaggccggtccagaagtggtcccagtgcggcctgacccagcccatcctggacgtcatc
gcctcgctcggctacgagaagcccacgcccatccagatgcaggccctccccgtcatcatg
tcgggccgcgacgtcatcggcgtggccaagacggggtcgggcaagaccatggccttcgtg
ctgcccatgctgcgccacatcaaggaccaggaccccgtcggcggcgacgacgggcccatc
gccctgatcatgacgccgacccgcgagctgtgcacccagatctactcggacctgctgccc
ttcgccaaggcgctcaagctgcgcgccgtcgccgcgtacggcggcagcgccatcaaggac
cagatcgccgagctcaagcggggcgccgagatcatcgtcgccacgccgggccgcatgatc
gacctcctcgccgccaactcgggccgcgtcaccaacctcaagcgcgccacgtacctggtg
ctcgacgaggccgaccgcatgttcgacatgggcttcgagccccaggtcatgaagatcttc
caaaacgtccgcccggaccgccagaccatcctcttctcggccaccatgccgcgcatcatc
gacgccctcaccaagaaggtgctccgccagcccgtcgagatcacggtcggcgggcgcagc
gtcgtggcgcccgagatcacgcaggtcgtcgaggtcctggaggaaagcaaaaagtttgtc
cgcctcctcgagctcctcggcgagctgtacaaggacgacgacgacgtgcgcgccctcatc
tttgtcgagcggcaggaaaaggccgacgacctgctccgcgagctcctgcgccgcggctac
ggctgcatgtcgatccacggcggcaaggaccaggaggaccgcaactcgaccatctcggac
ttcaaaaagggcgtctgccccatcctcatcgccacctcggtcgccgcccgcggcctcgac
gtgaagcagctcaagctcgtcatcaactacgacgcgcccaaccacctcgaggactacgtc
caccgcgccggccgcacgggccgcgcgggcaacacgggcaccgccgtcacctttgtcacg
gcggagcaggagaactgcgccacgtgcatcgccaaggcgctcgagcagagcggccagccc
gtgcccgagaagctcgacgagatgcgcaagtcgtggcgcgaaaaggtcaaggcgggcaag
gccaaggacgcgagcgggttcggcggcaagggcctggagcgcctcgacaaggagcgcgag
gcggcccgcctgcgcgagcgcaaaacccacaaggccgagggcgacgaggaggaggacgag
gccgccgacgccgccggcgccggcaagaaggacgcggccaagtcgctcgtcgaagccgcc
gcgtcggccatcgtctcgcgcgacgccgcccgcgcggccacggcggccgccccggccgag
gccgaagccgcagcggccgtccgcggcggcgtccccgtcgccacgggcaagggcggggcc
ctcgacaaggccgcctcggccatcagcgagatcaacgcgcgcctcgcgcgcgccggccag
ctgcgccagggccagcccatcgacaacaagggtcccgacgcgggcgcgttccacgccacg
ctcgagatcaacgacttcccgcaaaaggcgcggtgggccgtcacgaaccgcaccaacgtg
gccaagatcctcgaggccacgggcacgtccatcacgaccaagggcagctactaccctccc
ggaaaggagccgcagcccggcggcgatcccaagctgtacattcttatcgagggcgacacg
gagctggtggtgagcaaggccttgtcggagctgacgaggctgctgagggaggcgaccatc
gcggcggccgagagcgagagcagggcgccgatcggaggccggtataccattacgtag
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