Remersonia thermophila: 98123005
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Entry
98123005 CDS
T10833
Symbol
VTJ83DRAFT_2125
Name
(RefSeq) hypothetical protein
KO
K14284
nuclear RNA export factor
Organism
rthe Remersonia thermophila
Pathway
rthe03008
Ribosome biogenesis in eukaryotes
rthe03013
Nucleocytoplasmic transport
rthe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
98123005 (VTJ83DRAFT_2125)
03015 mRNA surveillance pathway
98123005 (VTJ83DRAFT_2125)
03008 Ribosome biogenesis in eukaryotes
98123005 (VTJ83DRAFT_2125)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98123005 (VTJ83DRAFT_2125)
03009 Ribosome biogenesis [BR:
rthe03009
]
98123005 (VTJ83DRAFT_2125)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
98123005 (VTJ83DRAFT_2125)
mRNA cycle factors
Stress granule specific factors
98123005 (VTJ83DRAFT_2125)
Ribosome biogenesis [BR:
rthe03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
98123005 (VTJ83DRAFT_2125)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
TAP_C
LRR_4
LRR_NXF1-5
LRR_9
RRM_9
UBA_8
LRR_8
NTF2
UBA_4
Motif
Other DBs
NCBI-GeneID:
98123005
NCBI-ProteinID:
XP_070868665
JGI:
Remth1_2125
LinkDB
All DBs
Position
2:join(2441451..2441897,2441964..2443475)
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AA seq
652 aa
AA seq
DB search
MAPGKRPRDGAGAGGSHHDPLRAPRGGGISKRRRPVTGDRDGDIDMDSAPRISGDTAGRG
GRNPRRANGDGKRGGVQGSLARLTPTARENLLSKAERSAAGKGSDKKVAIKIRGMKDSKA
SGNRDGGLRSLLDFIERKASKGRPITLGRAVVRGEDVCLTVSQEDAQNILRLNGYTFAGV
PLAIETDDAAATQGSGASTTGQDGNTSDVKTKMLGMLASRYDADGLLLNLSSLGTDPIMI
ELKAVETKALAEKTFKALLFLVSQRFDSKDAKDAAIQAVSLANNGIQDVKEVFNLARDLP
RLRRLDLSGNSLQDFSGLSKWRHEFRLLEELHLVGNPLTSLPNYPKQVIEWFPNLQILDG
QQVRTPKEAADTLMEWFPRPIPALPSNLRDGGNNVAGAFLGAFFPAYDQDRPALLKQFYD
DESVFSLTAEPEDSSAPYKTFTRNLEKIGARDPATHQRLFSGAAVIAELWSRLPATRHPA
LDDLNLWKIDCHTFRSLADPTGMGEAMGLIINVRGQFEEPDPAGQVPLRRKFHRCFILAP
SKPGAPHPFRVLSDQLSIMPGQPWGAPAQVTPAVPTQPAQVPIALGDAAQPGPVAPDDVR
ANLLFEVSRRTGMTAEYAEMCLGAANWDLELALTFFEQKKAELPPEAFLQPS
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggctcccggcaagcgtccccgcgatggcgctggcgctggcggaagccaccacgaccca
cttcgagctccccgcggtggcggcatctccaagcggcgccgcccggtgaccggcgatcga
gacggcgatattgatatggacagcgcccccaggatatctggcgacactgcaggccgcggg
ggccgcaacccgcgccgagccaacggcgatggaaagaggggtggcgttcaaggatccctg
gctcgcctcactccaaccgcccgcgagaatttactttcaaaggcggagcgcagcgcggct
ggaaaggggtcggacaagaaagtcgccatcaagatccgcggcatgaaggacagcaaggcc
tccgggaatcgggacggaggccttcgatcgctgctggatttcatcgagcgcaaggcatcg
aagggccgacccatcacgctcggccgagcggttgtccgcggcgaagacgtgtgccttact
gtcagccaggaagacgcccaaaacattcttcgcctcaacggttataccttcgccggcgtc
cccctcgcgatcgagacggacgatgccgcagccacccaaggatcgggcgcctcgacgacg
ggtcaagacgggaacacctctgacgtgaagaccaaaatgctcggcatgttggcttcgaga
tacgacgccgacggtcttctcctgaacctctccagcttgggcacagatcccatcatgatc
gaactgaaggccgtcgaaaccaaggcgcttgccgaaaagaccttcaaggcgcttctcttc
ctggtctcgcagcgctttgacagtaaggatgccaaggacgcggccattcaggcagtgagc
ctggccaacaacgggattcaagacgtgaaggaggtcttcaatcttgcgcgcgaccttccg
cgtcttcgccgcctcgacctcagcggaaacagtctgcaggacttctcgggattgtccaag
tggcggcacgaattccgcctcctcgaggagctccatttggtcggcaaccctctcacctcg
cttcccaactaccccaagcaggtgatcgaatggttccccaacctgcagatcttggatgga
cagcaggtcaggacccccaaagaggccgcagacaccctcatggagtggtttccccgcccc
atccccgcgctcccgtcgaacctacgcgatggcggcaacaatgtggccggtgcctttctc
ggggccttcttcccggcatacgatcaagatcggcccgcgcttctcaaacagttttacgac
gacgagtcggtcttctcgctcaccgcggagccggaagacagctcggcaccctacaagacc
ttcaccaggaacctcgagaagatcggtgctcgagacccagcgactcatcaacgtcttttc
agcggggctgcggtcattgccgagctgtggtcccgccttccagccacacgtcacccggcc
ctcgacgatctcaacttgtggaagatcgactgccatacgttccgaagcctggcggatccc
acggggatgggcgaggccatgggtctcataatcaacgtccgaggccagttcgaggaaccc
gaccctgccggtcaggtccctctcaggcggaagtttcatcgttgcttcatactcgcgcca
agcaagccaggcgcgccgcatcccttccgcgtcttgagcgaccagctgtcgataatgcca
ggacagccttggggagcccccgctcaagtcacgcccgccgtcccaacgcaacccgcgcag
gtgcccatcgcgctcggcgacgcggcccagccaggtcctgtggcccctgacgatgttcgg
gcaaacctgctcttcgaggtgtcccgccgcaccggcatgactgccgagtatgccgagatg
tgcctcggggcggcgaactgggacctcgagttggcgctgacctttttcgagcaaaagaag
gcggaattgccgccagaggccttccttcagccgtcgtag
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