Remersonia thermophila: 98123045
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Entry
98123045 CDS
T10833
Symbol
VTJ83DRAFT_2161
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
rthe Remersonia thermophila
Pathway
rthe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
98123045 (VTJ83DRAFT_2161)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98123045 (VTJ83DRAFT_2161)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
98123045 (VTJ83DRAFT_2161)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_CSD1
Rrp44_S1
OB_Dis3
PIN_4
CSD2
OB_HELZ2
Dis3l2_C_term
OB_RNB
DUF3221
Motif
Other DBs
NCBI-GeneID:
98123045
NCBI-ProteinID:
XP_070868701
JGI:
Remth1_2161
LinkDB
All DBs
Position
2:join(2596676..2596871,2596930..2599703)
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AA seq
989 aa
AA seq
DB search
MASLKRSADSDPFAANISSKVYVRSTKSGKVQKIVREVYLRQDIPCSSRLCQACLRTAPR
DAAGRLAPFVLSEAPAGTSAYPQGHYLVPDTNIFLTAMDLFEQSSAFYDVVVLQTVLEEL
RNRSLPLYNRLVSLTKSDEKRFYVFFNEFRLETHVARLEGESVNDRNDRAVRRAVAWYSQ
HLARTGAKKVPAVVMLSNDRDNLRKAKEEGIPASSLRDYVSQLKDGESLLDMVPDTEDQD
DASSKDRRPGQPLYPEYFSMSKMMTGVKNGLLHQGIFNVSPYNYLEGSIRVPAFPKPLLI
LGRENINRAIDGDVVVVEVLPKDQWKEPSTRVIEEEAITQNENPDAEEAAGSIVSEKERK
ALQEEVRRTHSKTTEGHAQPTARVVGVVKRNWRQYVGHIDQSSVSQSAQQGRKQDAVFVL
PMDRKIPKIRLRTRQVAELLGKRIVVAIDAWDRSSRHPIGHLVRSLGELETKAAETEALL
LEYDVQYRPFPKTVLDCLPKEGHDWRVPQSLDDPGWRGREDLRHLLICSIDPVGCQDIDD
ALHSRPLPNGNFEVGVHIADVSHFVRPNTAMDAEASIRGTTVYMVDKRIDMLPMLLGTDL
CSLKPYVERFAFSVLWELTPDADVVNVRFTKSVIKSREAFSYEQAQLRVDDHSQQDDLTK
SIRILMALSRKLKQKRLDAGALSLSSPEVKVQMESETSDPIDVKTKEHLDTMSLVEEFML
LANVSVARRIYEAFPQTALLRRHGAPPKTNFDELANQLRVKRDLDLSVESSRALADSLDA
CVDPKEPFFNILVRIMATRCMMAAEYFCAGTQAYPEFRHYGLASEIYTHFTSPIRRYADL
VAHRQLAAAIGYEAMHPAERSRGRLEAVCKNINVRHRNAQLAGRASIAYYVGQALKGKAA
EEDGYVIKVFSNGFVVLVPKFGIEALIRLRDLAEPEPAAEYDAETYTLRTSGSREVAIEV
FQKVRVRVTDHKDEATGKRGVKMELLNTY
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcctcaagcggtcggccgactcggatcccttcgccgccaacatctcgagcaag
gtgtacgtgaggtcaaccaaaagcggcaaggtccagaaaattgtacgcgaggtctacctt
cgtcaagatatcccgtgttcctcgaggttatgccaggcctgcctcaggacggctccccga
gatgccgccggtcgacttgccccgtttgtcctctccgaggcccccgccggcaccagcgca
tacccccagggtcactacctggtgcccgacaccaacatcttcctgaccgccatggacctc
tttgagcagagctcggccttttacgacgtcgttgtcctgcaaacggtcctcgaggagctg
cgcaatcgctcgctgcccctctacaaccgccttgtcagcctcaccaagagcgacgagaag
cgcttctatgtcttcttcaacgagtttcgcctcgagacccacgtggcccgtctcgagggc
gagtcggtcaacgaccgcaacgaccgcgccgtgcgccgcgccgtcgcctggtattctcag
cacctggcccgcacgggcgccaagaaggtgcccgccgtggtgatgctgagcaacgaccgc
gacaacctgcgcaaggccaaggaagagggcatccctgcctcctccctgcgcgactacgtc
tcccagctcaaggacggcgagtccctgctggatatggtcccggataccgaggaccaggac
gacgcttcctccaaggataggcgacccggccagccgctctaccccgagtactttagcatg
tccaagatgatgacgggcgtcaaaaacgggctgctgcaccagggcatcttcaacgtctcg
ccgtacaactacctcgagggctccatccgcgtccccgcgtttcccaagccgctgctgatc
ctgggccgcgagaacatcaaccgcgccatcgacggcgacgtggtggtggtcgaggtgctg
cccaaggaccaatggaaagagccgtcgacccgggtcatcgaagaggaggccatcacccaa
aacgagaacccggacgccgaggaggccgcgggcagcatcgtcagcgaaaaggagcgcaag
gcgctgcaggaggaggtacggcggacgcacagcaagacgaccgagggccacgcccagccg
acggccagggtggtgggcgtggtcaagcgcaactggcggcagtacgtcggccacatcgac
cagtcgtccgtcagccagtcggcgcagcagggacgcaagcaggacgccgtcttcgtgctg
cccatggaccgcaagatccccaagatccgcctgcgcacccgccaggtggccgagctgctc
ggcaagcgcatcgtggtcgccatcgacgcctgggaccgcagctcgcgccaccccatcgga
cacctcgtgcggtcgctgggcgagctcgagactaaggcggccgagacggaggccctgctc
ctcgaatacgacgtccagtaccggccgttccccaagacggtgctcgactgcctccccaag
gaaggccacgactggcgggtgccgcagagcctggacgacccggggtggcgcggccgcgag
gatctccggcacctgctcatctgcagcatcgacccggtcggctgccaggacatcgacgac
gcccttcactcgcggccgctccccaacggcaactttgaggtgggcgtgcacatcgccgac
gtgtcgcactttgtcaggcccaacacggccatggacgccgaggcgagcatccgcggcacc
accgtctacatggtggacaagcgcatcgacatgctgcccatgctcctcggcaccgacctc
tgctcgctcaagccctacgtcgagcgctttgctttttcggtgctgtgggagctcacgccc
gacgccgacgtggtcaacgtgcgcttcaccaagtcggtcatcaagtcccgcgaggccttc
agctacgagcaagcccagctgagggtcgacgaccactcgcagcaggacgacctcaccaag
agcatccgcatcctgatggccctgtcgaggaagctcaagcagaagcgcctcgacgccggc
gccctcagcctgtcctcccccgaggtcaaggtgcagatggagtcggaaacctcggacccc
atcgacgtcaagaccaaggagcacctcgacaccatgtccctcgtcgaggagttcatgctc
ctcgccaacgtcagcgtcgcccggcgcatctacgaagccttcccccagacggccctcctc
cgccgccacggcgcgccgccaaagaccaactttgacgagctcgccaaccagctccgcgtc
aagcgcgacctcgacctctcggtcgaatcctcgcgcgccctggccgacagcctcgacgcc
tgcgtggaccccaaggagcccttcttcaacatcctcgtccgcatcatggcgacccgctgc
atgatggcggccgagtacttttgcgccggcacccaggcctatcccgagttccgccactac
ggcctcgcctccgagatctacacgcacttcacgtcccccatccgccgctacgccgacctg
gtcgcccaccgccagctggcggccgcgatcgggtacgaggcgatgcaccccgccgagcgc
agccgcggcaggctcgaggccgtctgcaagaacatcaacgtccgccaccgcaacgcccag
ctcgccggccgcgcgagcatcgcctactacgtcgggcaggccctcaagggcaaggcggca
gaggaggacggctacgtcatcaaggtctttagcaacgggttcgtcgtgctcgtccccaag
ttcggcatcgaggcgctcatccggctgcgcgacctcgccgagccggagcccgcggccgag
tacgacgccgagacgtacacgctgcgcaccagcgggagccgcgaggtcgccatcgaggtg
ttccaaaaggtgcgcgtgcgcgtgacggatcacaaggacgaggcgacgggcaagaggggg
gtgaagatggagctgttgaacacctactaa
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