KEGG   Remersonia thermophila: 98123061
Entry
98123061          CDS       T10833                                 
Symbol
VTJ83DRAFT_2176
Name
(RefSeq) hypothetical protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
rthe  Remersonia thermophila
Pathway
rthe03018  RNA degradation
rthe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rthe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    98123061 (VTJ83DRAFT_2176)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    98123061 (VTJ83DRAFT_2176)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rthe03019]
    98123061 (VTJ83DRAFT_2176)
   03041 Spliceosome [BR:rthe03041]
    98123061 (VTJ83DRAFT_2176)
Messenger RNA biogenesis [BR:rthe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     98123061 (VTJ83DRAFT_2176)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     98123061 (VTJ83DRAFT_2176)
Spliceosome [BR:rthe03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    98123061 (VTJ83DRAFT_2176)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 98123061
NCBI-ProteinID: XP_070868716
JGI: Remth1_2176
LinkDB
Position
2:join(2647393..2647417,2647528..2647604,2647668..2647859)
AA seq 97 aa
MSLNAYTDKRVCIITTDGRNLVGTLAAHDNTTNLVLKNTVERVIHSPDDGEPSAEVPLGL
YMIRGDNVALVGLVDEALDASINWTEVKGAPIGTTKH
NT seq 294 nt   +upstreamnt  +downstreamnt
atgtcgttgaacgcctacaccgataaaagggtgtgcatcatcaccaccgacggccgcaac
ctggtcgggaccctcgccgcccacgacaacaccaccaacctcgtcctcaagaacacggtc
gagcgggtgatccactccccggacgacggcgagccctcggccgaggtgccgctgggcctg
tacatgatccgcggcgacaacgtggcgctggtcgggctggtcgacgaggctcttgacgcg
agcatcaactggaccgaggtcaagggcgcgccgatcgggacgaccaagcactga

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