KEGG   Remersonia thermophila: 98123557
Entry
98123557          CDS       T10833                                 
Symbol
VTJ83DRAFT_2622
Name
(RefSeq) hypothetical protein
  KO
K15176  RNA polymerase-associated protein CTR9
Organism
rthe  Remersonia thermophila
Brite
KEGG Orthology (KO) [BR:rthe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rthe03021]
    98123557 (VTJ83DRAFT_2622)
Transcription machinery [BR:rthe03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    PAF1 complex
     98123557 (VTJ83DRAFT_2622)
SSDB
Motif
Pfam: TPR_1 TPR_2 TPR_8 TPR_19 TPR_16 TPR_CcmH_CycH TPR_12 TPR_7 TPR_14 TPR_6 TPR_11 TPR_Slam RNPP_C ARM_TT21_N ANAPC3 TPR_10 TPR-S
Other DBs
NCBI-GeneID: 98123557
NCBI-ProteinID: XP_070869162
JGI: Remth1_2622
LinkDB
Position
2:complement(join(4242063..4243316,4243394..4245985))
AA seq 1281 aa
MASPARSQANGANGPAGFAPKSKRFSDIPATIDIPMQDDVEVEIDLQVLPDDPTELCAVF
ENEHSPRMYWMTVALAYAKQNKIDFAIEMLLRGANVLQGNTRDKLTITTCICWLYLWKSR
EAPRVAPDGVPASEAKTKEHYLQLATQSLNDASRINPAFPPLFLARGVLILLRASLQPPS
KAPGAVDSHKVEQLRTALKSFEEALRVSQGKNMLALMGKARALYSLGRYPEALAAYQEVL
QKMPDLVDPDPRLGIGCCFWQLGFKDDAKAAWERCLEINPDSKHANILLGLYHLDASARV
PVNSPEFLRLYKKAMTEYTQRSFKLDKNLPLTCATFAGYFLSRKQFASVDTLAHKAIQYT
DVNAIASDGWYLLARKAHYDGDLDRAADYYRRADDARGGAERGYLPAKFGVAQLSVLKND
LGEAKLRLEKMIQQSKNYEAMILLGTIYAEEVFANQAAAVREDKSAEAKKALTLLEGVRA
AWKDPKKGLSPDPAVLLNLARLYEAESPDKALACLQHVEQLETDQIPRPEHPADAAAGDE
AAARAAVRKLLPPQLLNNIGCFYSQEGKHALATEYFQAALDSCARISQTETELDIDALLT
TISFNLGRSYENEGNVDGAVETYERLLSRHEDYTDARTRLAYIRLRRNPTSKEGPDAVAK
LYQENPTDLEVRALYGWFLSKVNAKKRPANLAEDPEQRHYKHTLQNYDKHDRYALVGMGN
LHLMAAREMRRETEQDRQKRSAAYTRAVEFFDKALQLDPKNAHAAQGIAIALVEDKKDYK
NALQIFIKVREAIQDVHVYVNLGHIYAELRQFTKAIESYETALSKEGKANDPVILSCLGR
TWLNKGRAERNLDAYKTALEYAEKALAVAPDQVHLKFNVAFVQIQIALTIHSLRESERNS
FQLEQAAEGLEAAIKALDEIAASPSPPYPKHDIEQRANMARNTQRKQLERALASQREYEA
RNEEKRAAALEQRQAELRRREEERKRKEEEERERQEKIRKEREEILARDRALAEQRAEEE
RARMEAEMTTDSETGEKVKRKKRSAPARRERDSRSREPGASERPRKGRASRRKKTDGEGG
DESRPKKKQRVAAKKDNPKYKSAEIVVDSSDDDEGDYGAHDDDEDPLERAERALERSARR
RRSSASGGSDASRSRSRNRSRSRSRSRSARRRRGSSPDEDDDDDEERAPVVRRRRRSSGV
RDDDDEGADRMDVDREERRAQSRSGEDDDEEEAVARRPQGNRARRGRIVDESDEEEEEGG
GAAATPAAEDKDTSMVDAEDE
NT seq 3846 nt   +upstreamnt  +downstreamnt
atggcgtcccccgcccggagccaggccaatggcgccaatggcccggccggcttcgccccc
aagagcaagcgcttctccgacataccggccaccatcgacatccctatgcaggatgacgtg
gaggtcgagatcgacctccaggtgctgcccgacgacccgaccgagctgtgcgccgtcttc
gagaacgagcactcgccgcgcatgtactggatgacggtcgccctggcctatgccaagcag
aacaagatcgacttcgccatcgagatgctcctccgcggcgccaacgtgctccagggcaac
acgcgcgacaagctcaccatcaccacctgcatctgctggctgtacctctggaagagccgc
gaggccccgcgcgtcgcccccgacggcgtcccggcctccgaggccaagaccaaggagcac
tacctgcagctcgccacccagagcctcaacgacgcctcgcgcatcaaccccgccttcccc
ccgctgttcctggcccgcggcgtcctgatcctgctgcgcgcctcgctccagcccccctcc
aaggcccccggcgccgtcgactcgcacaaggtcgagcagctccgcaccgccctcaagtcc
ttcgaggaggcccttcgcgtctcccagggaaagaacatgctcgccctcatgggcaaggcc
cgcgccctctactccctcggccgctaccccgaggccctggccgcctaccaggaggtgctc
cagaagatgcccgacctcgtcgacccggacccgcgcctcggcatcggctgctgcttctgg
cagctgggcttcaaggacgacgccaaggcggcctgggagcgctgcctcgagatcaacccg
gactccaagcacgccaacatcctgctgggcctctaccacctcgacgccagcgcccgcgtc
cccgtcaacagccccgagttcctccgcctctacaagaaggccatgaccgagtacacgcaa
aggtccttcaagctcgacaagaacctgcccctcacctgcgccacctttgccggctacttc
ctctcgcgcaagcagttcgcctcggtcgacacgctcgcccacaaggccatccagtacacc
gacgtcaacgccatcgccagcgacggctggtacctcctggcccgcaaggcccactacgac
ggcgacctcgaccgcgccgccgactactaccgccgcgccgacgacgcccgcggcggcgcc
gagcgcggctacctgccggccaagttcggcgtcgcccagctctcggtgctcaagaacgac
ctcggcgaggccaagctgcgcctcgaaaagatgattcagcagtccaagaactacgaggcc
atgatcctgctcggcaccatctacgccgaggaggtgtttgcgaaccaggccgccgccgtc
agggaggacaagtcggccgaggccaagaaggccctcaccctcctcgagggcgtccgcgcc
gcctggaaggaccccaagaagggcctgtcgcccgaccccgccgtcctgctcaacctggcc
cgcctgtacgaggccgagagcccggacaaggccctggcctgcctgcagcacgtcgagcag
ctcgagacggaccagatcccccgccccgagcaccccgccgatgccgccgccggcgacgag
gcggccgcccgcgccgccgtccgcaagctcctgccgccccagctcctcaacaacatcggc
tgcttctactcgcaggagggcaagcacgccctcgcgaccgagtacttccaggccgccctc
gactcgtgcgcccgcatcagccagaccgagaccgagctcgacatcgacgcgctcctgacc
accatctcgttcaacctcggccgcagctacgagaacgagggcaacgtcgacggcgccgtc
gaaacgtacgagcgcctgctgagccgccacgaggactacaccgacgcccgcacccgcctg
gcctacatccggctgcgcaggaaccccaccagcaaggaggggcccgacgccgtggccaag
ctgtaccaggagaacccgaccgacctcgaggtccgcgccctgtacggctggttcctgagc
aaggtcaacgccaagaagcgccccgccaacctggccgaggacccggagcagcgccactac
aagcacaccctgcaaaactacgacaagcacgaccgctacgccctggtcggcatgggcaac
ctgcatctcatggcggcccgcgagatgcgccgcgagacggagcaggaccggcagaagcgg
agcgcggcctacacgcgcgccgtcgagttcttcgacaaggcgctgcagctcgaccccaag
aacgcccacgccgcccaaggcatcgccatcgcgctcgtcgaggacaagaaggactacaag
aacgcgctgcagatcttcatcaaggtgcgcgaggccatccaagacgtccacgtctacgtc
aacctgggccacatctacgccgagctccgccagttcacaaaggccatcgagagctacgag
acggccctgtccaaggagggcaaggcgaacgacccggtcatcttgtcatgcctcggccgc
acctggctgaacaagggccgcgccgagcgcaacctcgacgcgtacaagacggccctggaa
tacgccgagaaggccctcgccgtcgcccccgaccaggtccacctcaagttcaacgtcgcc
tttgtgcagatccagatcgccctgaccatccactcgctccgcgaaagcgagcgcaactcg
ttccagctcgagcaggccgccgaagggctcgaggccgccatcaaggccctcgacgagatc
gccgcctcgccgagcccgccgtaccccaagcacgacatcgagcagcgcgccaacatggcc
cgcaacacccagcgcaagcagctcgagcgcgcgctcgcgagccagcgcgagtacgaggcg
cggaacgaggagaagcgcgccgccgccttggagcagcgccaggccgagctgcgccgtcgc
gaggaggagcgcaagcgcaaggaagaggaagagcgcgagcgccaggagaagatccgcaag
gagcgcgaggagatactcgctcgcgaccgcgcgctggcggagcagcgtgccgaggaggag
cgcgcgcgcatggaggcggagatgacgaccgactcggagacgggagagaaggtcaagcgc
aagaagcgctcggcccccgcccgtcgcgagcgcgattcccgctcccgcgagcccggcgcc
tccgagaggccgcgcaagggccgcgccagccgccggaagaagacggacggcgaaggcgga
gacgagtcccgccccaagaagaagcagcgcgtcgcggccaagaaggacaaccccaagtac
aagtcggccgagatcgtcgtcgacagcagcgacgacgacgagggcgactacggcgcccac
gacgacgatgaggacccgctggagagggccgagcgcgcgctcgagaggtcggcccgccgc
cgccgcagcagcgcgagcggcggcagcgatgccagccggagccggagtcggaaccggagc
cgcagccgcagccgcagccggtctgcgaggaggaggaggggctcgtctccggatgaggac
gacgacgacgacgaggaacgggcgccggtcgtgcggcggcggcggaggtcgtcgggcgtg
cgggatgacgacgacgagggcgcggatcggatggatgtggatcgggaggagcggcgtgcg
cagagcaggagcggcgaggatgacgacgaggaggaggcggttgcgcgtcgcccgcagggc
aacagggcgcgtagagggaggatcgtggacgagagcgacgaggaggaagaggagggcggc
ggcgcggcggccacgccggcggccgaggacaaggacacgagcatggtggatgccgaggat
gagtga

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