Remersonia thermophila: 98124179
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Entry
98124179 CDS
T10833
Symbol
VTJ83DRAFT_3185
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
rthe Remersonia thermophila
Pathway
rthe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
98124179 (VTJ83DRAFT_3185)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98124179 (VTJ83DRAFT_3185)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
98124179 (VTJ83DRAFT_3185)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
98124179
NCBI-ProteinID:
XP_070867063
JGI:
Remth1_3185
LinkDB
All DBs
Position
3:join(1303262..1303624,1303685..1303899,1303950..1304283,1304335..1304525,1304578..1305910)
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AA seq
811 aa
AA seq
DB search
MDSSLEFKPLRDSVHSSLIAITRSVNTLANEDLEFQRTVHPSVSKRLDKNSRRLLRLATG
VLRSAADLTSQRKVQLDDADDVEIQWRGIVDVVDSLLEKSDTCLDEFTGLIKRKDAPATE
SGRESNRSKLSATKQLGWSLKHANILKPQKAFEVKTDNFDTGPWKPPLTTKPHGLVPLEQ
SLETFVDQDNHTQYKHPYEHEITNMQYPSHVFEKRDPIPYSPMDTTEAIWVDTYEGVLEM
LEELKKAPEIAVDLEHHDYRTYRGLLSLMQISTREKDWIVDTLVPWRHKLEILNEVFADP
KIVKVLHGAFMDAVWLQRDLGLYLVGLFDTFHASDTLNYPTKSLAFLLKRFVDFDAAKQY
QLADWRIRPLPEEMFYYARSDTHYLLYIYDMLRNELVELAAKNASDESPIERVLRKSREV
ALSRYENLWFDPETGAGNRGWFNSLLKSSSLYNREQFAVYKAVYKWRDDIARKEDESPTF
IMPAQMLNDIARILPTDMKALWSLVAANARVLKGRLDELFEVIQEARVKGENGPTLLEFF
SRRTAAALEPFIGSVASTVIAPRAEEAPPLALVELKSEQSQLWGDVALNSRLDGTAKNPP
LDDSSRIPLYTFDFASVKEELPAPAAPSPPSEPAKPAVREEEAFTLRTKRKRKADEVDDS
GPAAAPEPTLDSVEMKDAAAAEQPGAGAEDPEEAADADADTAEVAILQNLSKKEKRRLRR
EAKKANTHSEAAEEDGEEKGEGEVEEEEEQPFDYTKAASVLRAAAENAAPAADGSGKKGT
FDPYVKRTSDAPTGARKMNHVRAGRTATFKK
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggattcttcgctcgagttcaagccgctccgggattcagtccattcgtcgctgatcgcc
atcacccgctccgtcaacacgcttgccaacgaggaccttgagttccagcgcaccgtccat
ccctccgtctcgaagcgcctcgacaagaactcgcgtcgcctgctccgcctggctaccgga
gtgctaaggtcggctgctgatctcacctcgcagaggaaagttcagctggacgatgcggac
gacgtcgagatccagtggagggggatcgtggatgtggtcgactcgcttctcgagaagtcc
gacacatgcctggacgagttcactggtctgatcaagcggaaagacgctcccgccaccgag
tcgggccgagagtcgaaccggtcaaagctctccgccacgaagcagctcggctggtcgctg
aagcacgcgaacatccttaagccccagaaagccttcgaggtcaagacggacaacttcgac
acgggtccttggaagcctcccctcacgaccaagccccatggcctggtcccgttggagcag
agcctcgagacattcgtcgaccaggataaccacactcaatacaagcatccgtacgagcac
gaaatcaccaacatgcagtacccctcgcatgtcttcgagaaacgcgacccgatcccctac
tctcccatggatacgaccgaggcgatctgggtcgatacctacgaaggcgttttggagatg
cttgaggagctcaagaaggcgcccgagatcgccgtcgatctggaacaccacgactaccgg
acgtatcggggtctgctgtcgttgatgcagatcagcacgagagagaaggattggatagtc
gacactctggtgccatggaggcataagctggagatcctgaacgaagtcttcgcggaccca
aagattgtcaaggttctgcacggcgcgttcatggatgccgtctggctccaacgagacctt
ggcctgtaccttgtcgggcttttcgacaccttccacgccagcgacaccctcaactacccg
accaagagcttggcgttcctgctcaagaggtttgtcgacttcgacgccgcgaagcagtac
cagctggccgactggcgtattcggcctctgcccgaggagatgttctactatgctcggtcc
gatacccactacctgctctatatttacgacatgctccggaatgagctggttgagctggcc
gccaagaacgcatccgatgaaagccccatcgagcgcgtgctccgaaaatccagggaggtg
gccctctcgcgatatgagaatctctggtttgacccggagacgggcgcgggaaaccggggc
tggttcaactcgcttctcaagtcatcgtcgctttacaaccgcgagcagttcgccgtctac
aaggcggtctacaagtggcgggacgacatcgcgcgcaaggaggacgagagcccgaccttc
atcatgccggcgcagatgctcaacgacattgcgcgcatcctccccactgatatgaaggcg
ctgtggagcctggtcgcggccaacgcccgcgtgctcaagggccgcctggacgagctgttc
gaggtcatccaggaagcccgcgtcaagggagagaacgggcccaccctgctggagttcttc
agccggcgcacggcagccgcgctggaaccttttatcggctccgtggccagcacggtcatt
gcgccgcgggcggaggaggccccgccgcttgccctcgtcgagctcaagagcgagcagtcg
cagctgtggggagacgtggcgctgaattcgcgcctggatgggacggcaaagaaccccccg
ctcgacgacagctccagaattcccctctacacgtttgactttgcctcggtcaaggaggag
ctccctgcgcccgccgcgccgtcgccgccttcggaacccgcaaagcctgcggtccgcgaa
gaggaggcgtttaccctcagaaccaagaggaagcgcaaggccgacgaggttgacgacagc
ggaccggccgcggctcccgagcctacgcttgacagcgtggagatgaaggacgcggcggct
gccgagcagcccggggccggtgcggaggatccagaggaagccgccgacgccgatgccgac
accgccgaggtggcgatattgcagaacctcagcaagaaagaaaagcgccgcctcaggcgc
gaagcgaagaaagccaacacccattccgaggccgccgaagaggatggcgaggagaaggga
gaaggcgaggtggaggaggaggaggagcagcccttcgactacaccaaggccgcgtcggtg
ctgcgcgccgccgcggagaatgctgctcctgccgccgatggcagtggcaagaaggggacg
tttgacccgtacgtcaagaggacgagcgacgcgccgacgggggcaaggaagatgaatcac
gtgcgggccgggaggacggccacctttaagaaatga
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