Remersonia thermophila: 98124201
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Entry
98124201 CDS
T10833
Symbol
VTJ83DRAFT_3204
Name
(RefSeq) hypothetical protein
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
rthe Remersonia thermophila
Pathway
rthe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
98124201 (VTJ83DRAFT_3204)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98124201 (VTJ83DRAFT_3204)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
98124201 (VTJ83DRAFT_3204)
U7-dependent histone pre-mRNA processing factors
98124201 (VTJ83DRAFT_3204)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
98124201
NCBI-ProteinID:
XP_070867082
JGI:
Remth1_3204
LinkDB
All DBs
Position
3:join(1366977..1367122,1367211..1370088)
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AA seq
1007 aa
AA seq
DB search
MFSFRPLLGALSESPASQSLLELDGGVKILVDVGWDERFDVEMLRELEKQIPTLSLILLT
HATVSHLGAYAHCCKHFPLFTRIPVYATRPVIDLGRTLTQDLYASTPLAATTIPAASIAE
ASYSYAQAPAAAQNLLLQPPAHDEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAY
NAGHTLGGTLWHIQHGLESIVYAVDWNQGRENVFAGAAWLGGGGGAEVIEQLRKPTALVC
SSRTPEATLPRARRDEQLLESIKLCIARGGTVLIPVDSSARVLELAYLVEHAWRAEVAKD
NDAFKSASAYLAGRSIGSTMRNARSMLEWMDDSVVREFEAVAGGARPGGQAGFGAKAKDA
GPFDFKYLRLLERKAQVERVLQQAADAAAEPKGRLILATDASLEWGFSRDVLRAIAGDAR
NLVILTEKPSPAASAARALWDWWKERRDGVAVEETAGGDAFEQVYAGGRELDLADASRHA
LEGGELDVYQQWLATQRQLQATLQTSGAAAFEPSADAVDDDASETTTESDESETEQQGKA
LNASTTMGQASRRKVVLKDQDLGVMILLKKKGVYDFDVRGKKGRERMFPVVLRRRRADEF
GELIRPEDYLRAEEREDAEQDERQQQQQQDGPRQEHGLGKKRRFDDVGAAAAAAKGPSSW
PNKRAQLKRAVSDEPDAASPAGAAGPADGPGASGDELDELEDDEEPVVGPAKLVVTPRPV
TVNLRIAFVDFSGLHDKRSLTMLIPLIRPRKLILVAGSEDETLALAADCKTLLGPQLPAG
SSSRQTTADVFAPAVGTAVDASVDTNAWVVKLADSLVKRLKWQNVRGLGIVTVTGLLLPG
GQVALQDPSAAAGSREEQQDPDAANKRQKLEQAPQEPNQQPDGTLVATHPGGALAAAAAQ
PVPTLDVLPPALASAVRAAAQPLHVGDLRLADLRRAMLAAGHKAEFRGEGTLLVDGAVAV
RKTAQGRVEVENVGLPWLSSAGGAGGMATFYEVRRKIYEGLAVVAGA
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcttccgccccttgctgggcgctctcagcgagtcgcccgcctcgcagtcgctg
ctggagctcgacggcggcgtcaagatcctggtcgacgtcggctgggacgagcgcttcgac
gtcgagatgctgcgcgagctggaaaagcaaatccccaccttgtccctcatcctcctcacc
cacgccaccgtcagccacctcggcgcctacgcccactgctgcaagcacttcccgctcttc
acccgcatccccgtctacgcgacccgccccgtcatcgacctcggccgcaccctgacccag
gacctttacgcgtcgacgccgctcgccgccaccaccatccccgccgcctccatcgccgag
gcttcctactcgtacgcccaggccccggccgccgcccagaacctgctgctgcagcccccg
gcccacgacgagatcgcccgctacttctccctgatccagcccctcaagtactcgcagccg
caccagccgctgccgtcccccttctccccgcccctcaacggcctcaccatcacggcctac
aacgccggccacaccctcggcggcaccctctggcacatccagcacggcctcgagtccatc
gtctacgccgtcgactggaaccagggccgcgagaacgtctttgccggcgccgcctggctc
ggcggcggcggcggcgccgaggtcatcgagcagctgcgcaagcccaccgccctcgtctgc
agcagccgcacccccgaagccaccctccctcgcgcccgccgcgacgagcagctcctcgag
tccatcaagctctgcatcgcccgcggcggcaccgtcctcatccccgtcgactcgagcgcc
cgcgtcctcgagctcgcctacctcgtcgagcacgcctggcgcgccgaggtcgccaaggac
aacgacgccttcaagtcggcctcggcctacctggccggccgcagcatcggcagcaccatg
cgcaacgcccgcagcatgctcgagtggatggacgacagcgtcgtcagggagtttgaggcc
gtcgccggcggcgcccgccccggcggccaggccggcttcggcgccaaggccaaggacgcg
gggccgttcgacttcaagtacctcaggctgctcgaacgcaaggcccaggtcgagcgcgtc
ttgcagcaggccgccgacgcggcggccgagcccaagggccggctcatcctggccaccgac
gcgagcctcgagtggggcttctcgcgggacgtgctgcgcgccatcgccggcgacgcgagg
aacctggtcatcctgaccgagaagccgagccccgccgcctcggccgcccgcgcgctgtgg
gactggtggaaggagaggcgggacggcgtcgccgtggaggagacggccggcggcgacgcc
ttcgagcaggtgtacgcgggcggccgcgagctggacctggccgacgcgtcgcggcacgcc
ctcgagggcggcgagctggacgtctaccagcagtggctcgccacgcagcgccagctccag
gccacgctgcagaccagcggcgccgccgcgttcgagccgtcggccgacgcggtcgacgac
gacgcgtccgaaaccacgaccgagtcggacgagtcggaaaccgagcagcagggcaaggcg
ctcaacgcgtcgaccaccatgggccaggccagccgccggaaggtggtgctcaaggaccaa
gacctgggcgtcatgatcctgctcaagaagaagggcgtctacgactttgacgttcgcggc
aagaagggccgcgagcgcatgttccccgtcgtcctccgccgccgccgcgccgacgagttc
ggcgagctcatccggcccgaggattacctccgcgccgaggagcgcgaggacgcggagcaa
gacgagcggcagcagcagcagcagcaggacgggcctcgtcaggagcacggcctcggcaag
aagcgccgcttcgacgacgtcggcgccgccgccgccgccgccaagggcccgtcgtcgtgg
cccaacaagcgcgcccagctcaagcgcgccgtctcggacgagcccgacgcggcgtctcct
gccggcgccgccggccctgccgacgggcccggcgcttccggcgacgagctggacgagctc
gaggacgacgaggagcccgtcgtcgggcccgccaagctcgtcgtcaccccgcggcccgtc
accgtcaacctgcgcatcgcctttgtcgactttagcggcctgcacgacaagcgcagcctg
accatgctgatcccgctgatccggccccgcaagctgatcctcgtcgccggctccgaggac
gagacgctcgccctggccgccgactgcaagacgctgctcggcccgcagcttcccgccggc
tcgtcctctcgccagaccaccgccgacgtgttcgcccccgccgtcggcaccgccgtcgac
gcctcggtcgacaccaacgcctgggtcgtcaagctggccgactcgctcgtcaagcgcctc
aagtggcaaaacgtgcgcggcctcggcatcgtcaccgtcacgggcctcctgctgccgggc
ggccaggtcgccctccaagacccctcggccgccgccggcagccgcgaggagcagcaggac
cccgacgcggccaacaagcgccagaagctcgagcaggccccgcaggagcccaaccagcag
cccgacggcacgctggtcgccacccaccccggcggcgccctcgccgccgccgccgcccag
ccggtccccacgctcgacgtcttgcctcccgccctcgcctcggccgtccgcgccgccgcc
cagcccctccacgtcggcgatctgcgcctggccgacctgaggcgcgccatgctggccgcg
ggccacaaggccgagttccgcggcgaaggcacgctgctcgtggacggcgcggtggcggtg
aggaagacggcgcagggcagggtcgaggtggagaacgtcgggctgccgtggctgtcgtcg
gccggaggggcgggcggcatggcgacgttttacgaggttcggaggaagatttacgagggg
ctggccgtcgttgcgggcgcatga
DBGET
integrated database retrieval system
