KEGG   Remersonia thermophila: 98124271
Entry
98124271          CDS       T10833                                 
Symbol
VTJ83DRAFT_3268
Name
(RefSeq) hypothetical protein
  KO
K15172  transcription elongation factor SPT5
Organism
rthe  Remersonia thermophila
Pathway
rthe03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:rthe00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    98124271 (VTJ83DRAFT_3268)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rthe03021]
    98124271 (VTJ83DRAFT_3268)
   03019 Messenger RNA biogenesis [BR:rthe03019]
    98124271 (VTJ83DRAFT_3268)
Transcription machinery [BR:rthe03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     98124271 (VTJ83DRAFT_3268)
  RNA polymerase I system
     98124271 (VTJ83DRAFT_3268)
Messenger RNA biogenesis [BR:rthe03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     98124271 (VTJ83DRAFT_3268)
SSDB
Motif
Pfam: Spt5-NGN Spt5_N CTD KOWx_SPT5 KOW4_SPT5 KOW5_SPT5 KOW2_Spt5 KOW1_SPT5 DUF3912 KOW
Other DBs
NCBI-GeneID: 98124271
NCBI-ProteinID: XP_070867146
JGI: Remth1_3268
LinkDB
Position
3:complement(join(1615064..1615746,1615806..1618026,1618125..1618493))
AA seq 1090 aa
MASAPFQFAGDSESEDDNFNPAPADLSDEEDAEDQDDDSAGKKHRRGSSPAADNDPDEDD
GDGDEPVRTSKKRAREDDDEEENAADEDDEGAEGDGDEDEEELEEDDDEEEEDEDEEDED
VQHRHRRKRRKDHRAAFFDIEAEVEDEDEGEDDERDGEEIEDFIENAHPDDLAEPLHDDT
RHRELDRRREIEASMDAEKQAEILKERYGKRAHARGYNDMAVVPKRLLLPSVDDPGIWAV
RCKEGKERDVIFSIMRRVEERAGTKDELAITAAFERGGPNSVMKGYIYVEARRQNDVLLA
LDGVLDVYPRSKMILVEIKDMPDLLRVTKTPTLEPGAWVRLKRPAKHAGDLAQVLDVTEN
GLEARVRFIPRLDYGDKSDSFSMGASPAQRRRPGMPGPRPPQRLFSEIEARKKNPRFLSG
NPQTNTWTFMGEEFENGFQVKDIKIQHLEVKDVNPTLEEVTKFASGSEDGTENLDLKALA
ASLKDSNNSVAYVAGDVIEVYEGEQRGVVGRAVNVQGDIVTLKVTEGDLAGQTIEVPNKG
LRKRFRTGDHVKVIGGSRFRDEVGMVVKIVDDRVTLLTDQTNTEITVFSKDLREASDIGG
QGSLGQYSLLDLVQLDPTTVGCIVKVDRESMVVLDQNGDTKQVMPSQIANKLPKRKLAVA
ADRNGSEIRVDDVVREYGGQQRQGKIIHIHRSFVFLHSNATTENAGVFVTRAGNVTTIAA
KGGRTTSNAGPDLSTMNPALKRMGPNGPAGPMQPPKSFGRDRALGQTVSIRKGGYKGLMG
IVKDTTDTHARVELHGKNKIVTVLKVDLVFKDKITGKTIDIYNRGGRGGGMGGPGYPGGG
DRTGSRTPMGAGSGERTPAWGSKTAARTPAWGRAEGSGSRTPAWGDGSRTVNPYDGSRTA
YGDGNRTAYGGATSYGGSRTPAWSSSAKTPAHDGFGHGSKTPAWGVGASSGPSSTDPWGS
KTPAYGGISAPTPGASGPDGWGYTPGPSGSSSSHAPYDAPTPGAALSAPTPGAALSAPTP
GALSAPTPAAISAPTPGAWQGGWGADAAPTPAVGAPTPAASGGYYGAPTPAAFAAETPAA
SGDIRYADDD
NT seq 3273 nt   +upstreamnt  +downstreamnt
atggcgtccgcccccttccagttcgccggcgactccgagtcggaagacgacaacttcaac
cccgcccccgccgatctctccgacgaagaggatgccgaagaccaggacgacgactcggcc
ggcaagaagcaccgccgcggaagcagcccggccgccgacaacgacccggacgaggacgac
ggcgatggcgacgagcccgtgcgcacgtccaagaaacgcgcccgcgaagacgatgacgag
gaagaaaatgccgcagacgaagacgacgagggcgccgagggcgacggcgatgaagatgag
gaagagctggaggaagacgacgacgaggaggaggaggacgaggacgaggaagatgaggat
gtccagcatcgccaccgtcgcaagcggagaaaggaccaccgcgccgccttcttcgatatc
gaagccgaggtcgaggacgaggacgagggcgaagacgacgagcgcgacggcgaagagata
gaggacttcatcgagaatgctcatcccgacgacctcgccgagcccctgcacgatgacacg
cggcaccgcgagctcgatcggagacgcgagatcgaggccagcatggacgccgagaagcag
gccgagatcctcaaggagcgctacggaaagcgcgcccacgcccggggctacaacgacatg
gccgtcgtgcccaagcgcctcctcctccccagcgtcgacgacccgggcatctgggccgtc
cgctgcaaggagggcaaggagcgcgacgtcatcttctccatcatgcgccgcgtcgaggag
agggccggcaccaaggacgagctggccatcacggcggcctttgagcgcggcggccccaac
tcggtcatgaagggctacatctacgtcgaggcgcgtcgccaaaacgacgtcctgctggcc
ctcgacggcgtgctcgacgtctatccgcgctccaagatgatcctcgtcgagatcaaggac
atgcccgacctgctccgcgtgacaaagacccccaccctggagcccggagcctgggtgcgc
ctcaagaggcccgccaagcacgccggcgatctcgcccaggtcctcgacgtgaccgagaac
ggcctcgaggctcgcgtgcgcttcatcccccggctcgactacggcgacaagagcgactcc
ttctccatgggagcctcccctgcccagcggaggcgccctggcatgcccgggccccgcccg
ccgcagcgcttgtttagcgagatcgaagcgcgcaagaagaacccgcgcttcctctcgggc
aacccgcagaccaacacgtggacgttcatgggcgaagagttcgagaacggcttccaggtc
aaggacatcaagatccagcacctcgaggtcaaggacgtcaaccccacgctcgaggaggtc
accaagtttgccagcggctccgaggacggcaccgagaacctcgacctcaaagccctggcg
gccagcctcaaggatagcaacaacagcgtggcctacgttgccggcgacgtcatcgaggtg
tacgagggcgagcagcgcggcgttgtcggccgcgccgtgaacgtccagggcgacatcgtg
acgctcaaggtgacggaaggcgacctcgccggccagaccatcgaggtgcccaacaagggt
cttcgcaagcgcttcaggaccggcgatcacgtcaaggtcatcggcggcagccgcttccgc
gacgaggtcggcatggtggtcaagatcgtggacgaccgcgtcaccctcctcacggaccag
accaacaccgagatcaccgtgttcagcaaggatctgcgcgaggcgagcgacattggcggt
caggggtcgctgggtcagtactcgctgctggatctggtgcagcttgaccccaccacggtc
ggctgcatcgtcaaggtggatcgcgagtccatggtggtcttggaccagaacggcgacacc
aagcaggtgatgccgtcgcaaatcgccaacaagctgcccaagcgcaagctcgccgtcgcc
gccgacaggaacggctccgagattcgcgtcgacgacgtggtccgcgagtacggcggccag
cagcgccagggcaagatcatccacatccaccgctcctttgtgttcctgcacagcaacgcc
accaccgagaacgccggcgtcttcgttaccagggccggcaacgtcaccaccatcgcggcc
aagggcggccggaccacgtccaacgcgggcccggatctgagcaccatgaacccggcgctc
aagcgcatgggacccaacgggcccgccggccccatgcagccgcccaaatcgttcggccgc
gaccgcgccctgggccagaccgtgagcatccggaagggcggatacaagggcctgatgggc
atcgtcaaggacacgaccgacacgcacgcccgcgtcgagctccacggcaagaacaagatc
gtgacggttctcaaggtcgacctggtcttcaaggacaagatcacgggcaagacgatcgac
atctacaaccggggcggccgcggcggcggcatgggcggccctgggtaccccggaggcggt
gaccgcacgggaagcaggactcccatgggtgcgggcagcggggagaggactcccgcttgg
ggctccaagacggcggctcgtactcccgcctggggccgcgccgagggttccggctcgcgc
acgcccgcctggggcgatggctcgcgcaccgtcaacccctacgacggcagccgcaccgcc
tacggagatggcaaccgcaccgcctacggcggcgccacgtcgtacggcggctcgcgcacc
ccggcgtggtcttcctcggccaagactcccgcccacgacggcttcggccacggctccaag
acgcccgcctggggcgtcggcgcgtcgtcgggcccctcgtctaccgacccctggggctcc
aaaacccccgcctacggcggcatctcggcccctacccccggcgccagcgggcctgacggc
tggggctacacccccggtccgagcggctcttcgtcttcgcatgcgccctacgacgcgccc
acgcccggggccgcgctctcggccccgacgccgggagccgcgctcagcgctccgacccca
ggcgcgctctcggccccgaccccggcggccatcagcgcgccgactccgggcgcgtggcag
ggcggctggggcgccgatgcggcgccgacgccggccgtcggcgctccgaccccggcggcg
agcggcgggtactacggcgcgccgaccccggcggcctttgcggccgagacgccggcggcg
agcggcgatatccggtatgcggatgacgattag

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