KEGG   Remersonia thermophila: 98124461
Entry
98124461          CDS       T10833                                 
Symbol
VTJ83DRAFT_3439
Name
(RefSeq) hypothetical protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
rthe  Remersonia thermophila
Pathway
rthe03018  RNA degradation
rthe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rthe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    98124461 (VTJ83DRAFT_3439)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    98124461 (VTJ83DRAFT_3439)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rthe03019]
    98124461 (VTJ83DRAFT_3439)
   03041 Spliceosome [BR:rthe03041]
    98124461 (VTJ83DRAFT_3439)
Messenger RNA biogenesis [BR:rthe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     98124461 (VTJ83DRAFT_3439)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     98124461 (VTJ83DRAFT_3439)
Spliceosome [BR:rthe03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    98124461 (VTJ83DRAFT_3439)
SSDB
Motif
Pfam: LSM SM-ATX LSM14 LSM12_LSM
Other DBs
NCBI-GeneID: 98124461
NCBI-ProteinID: XP_070867317
JGI: Remth1_3439
LinkDB
Position
3:join(2214682..2214706,2214788..2214844,2214948..2214986,2215108..2215135,2215200..2215263,2215330..2215380)
AA seq 87 aa
MAAQLLPLELIDKCVGSRIWVIMKGDKEFTGTLVGFDDYVNMVLEDVTEFDYSGTHSKLK
KILLNGNNICMLIPGGEGPTGITAPAA
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctgctcagctcctcccgctagaactcatcgacaagtgcgtcgggtcccgcatctgg
gtcatcatgaaaggtgacaaagagttcaccggcaccctcgtcggcttcgacgactacgtc
aacatggttctcgaggacgtcaccgagttcgattactccggcacccactccaagctgaag
aagatcttgctgaacggaaacaacatctgcatgctcatcccgggaggcgaagggccgacg
ggcatcaccgctccagcggcgtag

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