KEGG   Remersonia thermophila: 98124463
Entry
98124463          CDS       T10833                                 
Symbol
VTJ83DRAFT_3440
Name
(RefSeq) hypothetical protein
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
rthe  Remersonia thermophila
Pathway
rthe03020  RNA polymerase
rthe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rthe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    98124463 (VTJ83DRAFT_3440)
  09124 Replication and repair
   03420 Nucleotide excision repair
    98124463 (VTJ83DRAFT_3440)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rthe03021]
    98124463 (VTJ83DRAFT_3440)
   03400 DNA repair and recombination proteins [BR:rthe03400]
    98124463 (VTJ83DRAFT_3440)
Transcription machinery [BR:rthe03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     98124463 (VTJ83DRAFT_3440)
DNA repair and recombination proteins [BR:rthe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      98124463 (VTJ83DRAFT_3440)
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L
Other DBs
NCBI-GeneID: 98124463
NCBI-ProteinID: XP_070867318
JGI: Remth1_3440
LinkDB
Position
3:complement(join(2215816..2216042,2216102..2216212,2216292..2216350,2217063..2217079))
AA seq 137 aa
MNAPDRFELFVLQEGEKKITEKVVSGMSNCSDFLLLKEDHTLGNLLSTYLRMAPHVMFAA
YKVGHPNVPEVLIRVQTDGSITPREALLTTLKQLVALYGQLGREFQKELALRKYADQSEN
AIADAAGPAGTSGQNGI
NT seq 414 nt   +upstreamnt  +downstreamnt
atgaacgccccggaccgctttgagctctttgtcctccaagagggcgaaaagaagatcacc
gagaaggtcgtgtcgggcatgtccaactgctccgactttctgctgctgaaggaggaccat
acccttggcaacctcctcagcacctacctgcgcatggcccctcatgtcatgttcgccgct
tacaaggtcggacaccccaacgtcccggaggtgcttatccgcgtccaaacggatggaagc
atcacgcctcgcgaggctctcctgacgaccctgaagcagctcgttgcgctctacggccag
ctggggcgtgagttccagaaggagcttgccctccgcaagtacgcggaccagagcgagaac
gccatcgccgacgcggccggccctgcgggcacctcgggccaaaacggcatctaa

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