Remersonia thermophila: 98124634
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Entry
98124634 CDS
T10833
Symbol
VTJ83DRAFT_3595
Name
(RefSeq) hypothetical protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rthe Remersonia thermophila
Pathway
rthe03013
Nucleocytoplasmic transport
rthe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
98124634 (VTJ83DRAFT_3595)
03015 mRNA surveillance pathway
98124634 (VTJ83DRAFT_3595)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98124634 (VTJ83DRAFT_3595)
Enzymes [BR:
rthe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
98124634 (VTJ83DRAFT_3595)
5.6.2.5 RNA 5'-3' helicase
98124634 (VTJ83DRAFT_3595)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
98124634 (VTJ83DRAFT_3595)
mRNA cycle factors
Common to processing body (P body) and stress granule
98124634 (VTJ83DRAFT_3595)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
UvrD-helicase
Helicase_RecD
SLFN-g3_helicase
NPHP3_N
PIF1
Viral_helicase1
nSTAND3
ATPase
AAA_22
SRP54
AAA_16
PhoH
AAA_10
AAA
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
98124634
NCBI-ProteinID:
XP_070867473
JGI:
Remth1_3595
LinkDB
All DBs
Position
3:complement(join(2778279..2781258,2781324..2781631))
Genome browser
AA seq
1095 aa
AA seq
DB search
MEGAFAHLGNHLLSDSAAAIKAGGADVLSNLDPDEDLLYGVSTGRGARSGLGNARRRQDD
DDNDTELLDDDDESLASVPVDGIAGLKLNASEEEKELPPHACAYCGIHSPASVVKCLTCS
KWFCSARGNSNSSHIVNHLVRARHKEVQLHPQSSLGDTILECYNCGTKNVFMLGFIPAKS
DTVVVLLCRQPCAASTSTKDMSWDISRWQPLIEDRTFLNWIVQPPTDAEQLRARHLTPPM
IAKLEEMWKETPNATVADLEKGVGVDDEPAPVLLRYEDPYQYQNIFGPLVKMESDYDKKL
KEAQSEDNLHVRWDQGLNNKHLASFILPKIESGDVKLAVGDEMRLRYKGDLRPAWEGVGY
VIKIPNNQSDEVTLELRKSANDKSVPIDISTNFSADYVWKATSYDRMQLAMKTFAVDEMS
VSGYLFYRLLGKEVTLGPMKTQLPKRFNVPGLPELNTSQMDAIKKVLSQPLALIQGPPGT
GKTVTSATIIYHMVKMNNSQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVESSV
KFLSLHEQVRMNDTNTELKRFRDLKADQGELSSQDEKKYKQLTRAAEREILNNADVVCCT
CVGAGDPRLAKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAA
KAGLNQSLFERLVKLGEMPCRLEIQYRMHPCLSEFPSNVFYDGSLQNGVTAVDRLRPDVD
FPWPVADMPMMFWSNLGNEEISASGTSYLNRTEAANVEKVVTRFLKAGVNPRDIGVITPY
EGQRSYIVSTMQNSGTFKKDTYKEVEVASVDAFQGREKDWIVLSCVRSNDNQGIGFLSDP
RRLNVALTRAKYGLVIIGNPKVLSKHELWHSLLVHFKDRKCLVEGPLNNLQTSLMQFSRP
KTRHRPPKQQTQHVASGYPNGRFGAANGPTRDYETGSILSYIPDDVSSIHGSSLGGAGLN
SAYPHMFSNFNPEQWPGLPGVGGSGRLGGKGRGRAAPSVAGESVANSELTDGTASVIGGK
GVGQGGASLGAGLSDAIASARHVSYTQSDRMTMDHLRNYYGDGGNGGRGGYPRRLDDDEK
SVSTAFASQIGSGFD
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcgccttcgcccacctcggaaaccaccttctttccgactcggctgccgccatc
aaggccggtggcgctgacgttctgtcaaacctcgacccggacgaggacctgctctacggc
gtttccacgggccgcggtgctcgcagcggcctcggcaacgcccgacgccgccaggacgac
gacgacaacgacaccgagctcctcgacgacgacgatgagagcctggctagcgttcccgtg
gacggcatcgccggcctcaagctgaacgcgtccgaggaagagaaggagctgcctccccat
gcctgcgcgtattgcggcatccactcgcccgcgagtgtcgtcaagtgccttacgtgcagc
aaatggttctgcagcgctcgaggcaactccaactcgtcccacattgtcaaccacctcgta
cgcgcccgccacaaagaagtccagctgcatccgcaatcgtccctcggcgacacgatcctc
gagtgctacaactgcggcaccaagaacgtttttatgctcggcttcatcccggccaagtcg
gacaccgtggtggttctcctgtgccggcagccctgcgccgccagcacctcgaccaaggac
atgagctgggatatctcgcggtggcagcccctcatcgaggaccggaccttcttgaactgg
atcgtccagcccccgaccgacgccgagcagctgcgcgcgcgccatcttacgccgcccatg
atcgccaagctcgaggagatgtggaaagaaacgcccaacgccaccgtggccgacctggaa
aaaggcgtgggcgtcgacgacgagcctgctccggtgctgctgagatacgaggatccctac
cagtaccagaacatctttggacccctggtcaagatggagtcggactacgacaagaagctg
aaggaggcgcagtccgaggacaaccttcacgtgcgctgggaccagggtctcaacaacaag
cacctcgcgagcttcatcctgcccaagatcgagtcgggagacgtcaagctcgccgtgggc
gacgagatgcggctgaggtacaagggcgaccttcgccctgcctgggagggcgtcggctac
gtcatcaagatccccaacaaccagtcggacgaggtcacgctcgagctgcggaagtcggcc
aacgacaagtcggtgcccattgacatttccaccaacttctcggccgactacgtctggaag
gccacgtcgtacgaccgcatgcagcttgccatgaagacgttcgcggtcgatgagatgagc
gtttccggctatctcttctatcggctgctcggcaaggaggtgacgctgggcccgatgaag
acgcagctacctaagaggttcaacgtcccaggcctgccggagctcaacaccagccagatg
gatgccatcaagaaggtgctgtcgcagcccctggccctgatccagggccccccgggcacc
ggcaagacggtgacttcggccaccatcatataccacatggtcaagatgaacaacagccag
gtcctcgtctgcgccccgtccaacgtggctgtcgaccagctctgcgagcgcatccaccgc
accggcctgaaggttgtccgcctcacagccaagtctcgcgaggacgtcgagtcctcggtc
aagttcctgtcgctccacgagcaggttcgcatgaacgacacaaacacggagctgaagcgg
ttcagagacctcaaggccgaccaaggcgagctgtcgtcccaggacgagaagaagtacaag
cagcttacgcgggccgccgagcgcgagatcctcaacaacgccgacgtggtgtgctgcacc
tgcgtgggtgccggcgaccccaggctggccaagatgaagttccgcaacgtcctcatcgac
gagtccacccagtcggccgagcccgagtgcatgatcccgctcgtgcttgggtgcaagcag
gtcgtgctggtcggcgaccacaagcagctcggccccgtcatcatgaacaagaaggcggcc
aaggcgggcctgaaccagtcgctgtttgagcggctggtgaagctgggcgagatgccctgc
cggctcgagatccagtatcgcatgcacccgtgcctctccgagttcccgtccaacgtattc
tacgatggctcgttgcagaacggcgtgacggcggtggaccgtctgcggcccgatgtggac
ttcccctggcccgtggccgacatgcccatgatgttttggtcgaacctgggcaacgaggag
atctcggcctccggcacgtcctacctcaatcgcaccgaggccgccaacgtcgaaaaggtg
gtgacgcgcttcctcaaggccggcgtgaaccctcgcgacatcggcgtcatcacgccgtac
gagggccagcgcagctacatcgtcagcaccatgcagaactcgggcaccttcaagaaggac
acgtacaaggaggtcgaggtggcgtcggtggacgccttccaggggcgcgagaaggactgg
atcgtgctgtcgtgtgtgcgctccaacgacaaccagggcatcggtttcttgtcggacccg
cggcgtctcaacgtggcgctcacgcgtgccaagtacggcctggtcatcatcggaaacccc
aaggtcctttccaagcacgagctgtggcacagccttctcgtgcacttcaaggaccgcaag
tgcctggtcgagggccctctcaacaaccttcagacgtcgctcatgcaattcagccggccc
aaaacgaggcaccgtcctcccaagcagcagacccagcacgtcgcgagcggctaccccaac
ggccgcttcggcgccgccaacggcccgaccagggactacgagacgggctccatcttgtcc
tacattcccgacgacgtgtcgtccatccacggctcttccctgggcggcgccggcctgaac
tctgcgtacccgcacatgttctccaacttcaaccccgagcaatggccgggcttgccgggc
gtgggcggcagcggtcggctgggcggcaaaggccgcggccgcgccgccccgagcgtcgcc
ggcgagagcgtcgccaacagcgagctcaccgacggcacggccagtgtcatcggcgggaag
ggggtgggccagggtggcgcgagcctgggcgcgggcctcagcgatgccatcgcctcggcg
cgccacgtctcgtacacgcagagcgaccgcatgacgatggatcacttgcggaactactac
ggcgatggcgggaacggaggtcgcggcggctatcctcgccgtctggatgacgacgagaag
agcgtcagcaccgcgttcgccagccagatcggctccgggttcgattga
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integrated database retrieval system
