Remersonia thermophila: 98125026
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Entry
98125026 CDS
T10833
Symbol
VTJ83DRAFT_3948
Name
(RefSeq) hypothetical protein
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rthe Remersonia thermophila
Pathway
rthe03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
98125026 (VTJ83DRAFT_3948)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rthe03021
]
98125026 (VTJ83DRAFT_3948)
03036 Chromosome and associated proteins [BR:
rthe03036
]
98125026 (VTJ83DRAFT_3948)
Transcription machinery [BR:
rthe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
98125026 (VTJ83DRAFT_3948)
Coactivators
SAGA/TFTC/STAGA complex
98125026 (VTJ83DRAFT_3948)
Chromosome and associated proteins [BR:
rthe03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
98125026 (VTJ83DRAFT_3948)
STAGA complex
98125026 (VTJ83DRAFT_3948)
TFTC complex
98125026 (VTJ83DRAFT_3948)
SAGA complex
98125026 (VTJ83DRAFT_3948)
SLIK complex
98125026 (VTJ83DRAFT_3948)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
TFIID_NTD2
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
ANAPC4_WD40
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
LisH
NBCH_WD40
Beta-prop_WDR75_1st
eIF2A
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_EIPR1
WD40_RFWD3
VPS8_N
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
98125026
NCBI-ProteinID:
XP_070867826
JGI:
Remth1_3948
LinkDB
All DBs
Position
3:join(3937950..3938096,3938536..3938718,3938773..3939578,3939637..3940810)
Genome browser
AA seq
769 aa
AA seq
DB search
MSNQAPQGAVPMSSGGYGQPPAAAGVGNTAPPPTTTTNNPPSAQNLNQIVTDYLKKKGFT
KTEAVFRQETAYLGPDGRPAHRNDDPGPKKYLKAFLLLKTWIENNLDIYKFELKKLVWPV
FVYSYLELVAQGYTDDAKHFLETLRPHLDAAYQEALGVLATVTLPQHVKENQTAQLYRGN
KYRIPLNQSLSGNLFHFLEREADEGGSTITYILQTHCIVETSARGPIEPYSFEAIYRRAQ
NLDLDEVDAQEGIPGVFTGVTNRDVLDTSAKLKLGPLPMEPELKEDVRAELEEEDQRYPP
ADGRPTLVEEFDRRIKREESADAPSRADLPLPPSRARDVVMEMQKVRENRDRFVIEGRTG
GIGIPVSACMFTLHNTLGSVSCMDFSNDHQLVAVGTMDSYIRVWSLDGKPLKTSLENEKD
LKVNNRKLIGHSGPVYGVSFSDSITNLNRNIYGEGSDKKPDTSTKLLLSCSADGQVRLWS
LDVWACLCIYKAHDGPVFRVLWGPHGHYFATAGWDKTVRVFTQDHASAQRLLVGHDTSIS
ALAWHPNGTYVFSASDEMDKSIRMWSIITGNCVRIFTGHTHYISALQCAGNGRILASADA
GGNIFLWDIEKGTRIKRMRGHGKGGIPSLSFSAESNVLVSGGLDGTVRVWDVELPADPSK
ANPLASVAAQTGQGGDGAGAAGDTIAVAGSSDGRSITVGGQAAQGAGATSASGATVGTSG
TGGGKKKTKEVQVTPDQISAFATKKTPVMKVQFTRMNLIVAGGCYDPER
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcaggctcctcaaggtgccgtcccaatgtcatcggggggctatggccaaccc
ccagcggcggctggtgtaggaaacacggcaccgccgccgacaacgacgacgaacaatccg
ccatcggcgcagaatcttaaccagattgtcaccgattatcttaagaagaaaggattcact
aagacagaggcagtcttccggcaagaaacggcctacctgggtcccgacgggcggcctgct
catcgcaatgatgatcctggtccaaagaagtacctgaaggcctttctgctgctgaagacg
tggattgagaacaatcttgacatctacaaattcgaactcaaaaagctggtctggccggtg
tttgtatactcgtacctcgagctggtcgcccaaggctatacggatgatgccaaacacttc
ctagagacgctgcgaccacatctggacgccgcctaccaagaggctctcggggtgctggcc
actgtcactctgcctcagcacgtcaaggagaaccaaactgcccagctctaccgcgggaac
aaataccgaatcccgctgaaccagtcgctgtcaggcaacctcttccactttctagagcgc
gaggccgatgagggcggatccaccatcacgtacatcctccagacgcactgcatcgtcgag
acaagcgcccgcgggcctatcgaaccatacagcttcgaggccatctaccggcgcgcccag
aacttggatttggacgaggttgatgcgcaggagggcattccgggcgttttcacgggcgtg
accaaccgcgatgttctcgacacgagcgccaagctcaagctcggcccgctgcccatggag
ccggaattgaaggaggacgtgcgagccgagctggaggaagaggatcaaaggtacccgccg
gcggatggtcggccgacgctggtcgaggagtttgacaggcgcatcaagcgtgaggagagc
gccgacgcgccatctcgggctgacctacccctccccccctcgcgcgccagagatgtggtc
atggagatgcaaaaggtccgcgagaaccgagacagattcgtcatcgagggtcgtactggt
ggcattggcatcccggtatccgcttgcatgttcacgttgcacaataccctgggaagcgtt
tcgtgcatggacttctcgaacgatcaccagctcgtagctgtcggcacgatggactcatac
atccgggtctggtctctggacggaaagccgctcaagaccagcctggagaacgagaaggat
ctcaaggtgaacaaccgtaagctcattgggcattcgggccccgtctacggcgtttccttt
tcggactccattaccaacctcaaccgcaacatttacggcgaaggaagcgataagaagcct
gacacgagcaccaagctgctgctgtcctgctcggccgacggccaggttcggctgtggtcc
ctcgacgtttgggcatgcttgtgcatctacaaggctcacgacgggccggtgttccgcgtg
ctctggggccctcacgggcactacttcgccacggcggggtgggacaagacggtgcgtgtc
tttacgcaggaccacgcctcggcccagcggctcctggtgggtcacgacacgagcatctcg
gccctcgcgtggcaccccaacggcacctacgttttctcggcgtcggatgagatggacaag
tcgatccgcatgtggtccatcatcacgggcaactgcgtgcgcatcttcaccggacatacc
cactacatcagcgcgcttcagtgtgctggcaacggccgcatcctcgccagcgccgacgcc
ggcggaaacatcttcctgtgggacattgagaagggcacgcgcattaagcgaatgcgtggc
cacggcaaggggggcatcccgtcgctaagcttcagcgccgagtccaacgtgctcgtgtcg
ggcggcctggacggcacagtgcgtgtctgggacgtggagctgccggcggatccaagcaag
gcaaacccgcttgccagcgtggcggcccagacaggccagggaggagatggtgccggtgcg
gccggtgacaccatcgccgtggcgggctcctccgacggccgtagcatcacggtcggggga
caggcggcgcagggagcgggcgcgacgagcgcctcgggagcgaccgttggcacatcaggg
acgggcggcggaaaaaagaagaccaaggaggtgcaggtcacgccagaccagatcagcgcg
tttgccaccaagaagacgcccgtcatgaaggtgcaattcacgcggatgaacctgattgtg
gctggtggctgttacgaccccgagcgctag
DBGET
integrated database retrieval system
