Remersonia thermophila: 98125400
Help
Entry
98125400 CDS
T10833
Symbol
VTJ83DRAFT_4284
Name
(RefSeq) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
rthe Remersonia thermophila
Pathway
rthe03013
Nucleocytoplasmic transport
rthe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
98125400 (VTJ83DRAFT_4284)
09122 Translation
03013 Nucleocytoplasmic transport
98125400 (VTJ83DRAFT_4284)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98125400 (VTJ83DRAFT_4284)
03041 Spliceosome [BR:
rthe03041
]
98125400 (VTJ83DRAFT_4284)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
98125400 (VTJ83DRAFT_4284)
Spliceosome [BR:
rthe03041
]
Complex C
Other components
EJC/TREX
98125400 (VTJ83DRAFT_4284)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
98125400 (VTJ83DRAFT_4284)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
LMNTD2_N
Motif
Other DBs
NCBI-GeneID:
98125400
NCBI-ProteinID:
XP_070865734
JGI:
Remth1_4284
UniProt:
A0ABR4D9G5
LinkDB
All DBs
Position
4:complement(join(623901..626038,626068..626621,626696..626979,627034..631941))
Genome browser
AA seq
2627 aa
AA seq
DB search
MPPKRKRTDRGPGDAGPRPSPHRPSDTALGQHDRSFDGGRGGGRGGRHPRRGDRRDSIQS
PGPASSFTNGPYPRSPSLPRPSSAASAGAAPMPTPSLPPQAPASASASASAPAPAPAPAP
APPQQQHHRQQQLHAQKLAPPAPPAAPPTPIQPFYDYTVITDDRVARWANGGRQEVVDHG
VQSRNDEDLTEVVVIFQELLHSVTGGRLQGADAGAVVREVLGPEPSQEDRDAGAFDPHTL
FLDTVSTFLDVESGPLLPQLRDFMAASEVSPALMRAVLDPPLLQHLDLIRDTFVRMGIRQ
STNLLYRQANYNLLREETEGFSKLVTELFTTGGSDRATSDLVHATFNKVMGLIGTFDLHP
GRVLDVIFDIYAAVLIKQCRFFIKFLRVSSWWPRSQLALPSDSFVGGLPIWALPDHAGFT
TTDDEEAVLAELRRKRDVAFWDRAREIKLDAYFELGGRRATPRAADKERLTNGGGGGDDD
DDDDDDAQNGPESDIERDWIRITKTRPPPGNRDAAQLLGFKLRFYTSEARDPDDTLPANL
FYLIALLIKVGFISLTDLWSHVWPPDEEMEEVRLKRLKELEEKEKASWSGGEKNALMTAG
ALPDDMPPPPTTTTATTTMTSQANARRDAAAAAGGPNGAKADPNGGNKASEPAESDSKAK
LPEPSVQKVDLLKCLLTIGALPEALFILGRHEWILGAYPDVVELLNRVLHQSIDAVYRDS
CPTPARGPSSPSAACPPKAQLDADQSGVPKGRVKLSTPPVKRALRWPFPDRPDVGDGASY
RFYWDEWADNIPVCRNVDDFFTLCDTLVNVVGVNIGLDAALVAKMASIGRKSLADDPSPD
NQGRWLELLKRLLVPSLSLGEPNSSVVDAVWHLLRRYPIRTRFNVYAEWYEGAISRLEPM
RHAFARTRRETLSKMKRLSHSNIYQMAKSLAKIAYPSPGIVCKVALLQIEAYSNLIEAFV
ECAKYFTDLGYDVLVWSVLSSLGDQQRSRTQETSVLLTSKWLQALSRFSGKVFEHYSNMD
PSPILRYVHSQLLRGNSTDLVILEELVMSMGGVVSGFDFTDAQLRAMTGGDVLRRETLLG
LGDKRAVSQRSAARLMKALSHSNLAGQLLINIAQYRQNAIYTIADGSARIKYLSAVVDDA
HKVLLQYLDLLVSNLDPAAFDRLIPDVIPLMRDYGLDANLAFTIRRASIRWDAKATASAA
SAPAGTPKESPGKGGAHGNAAALTDGDGDVAMDADGASASDGEAGAADDNNNAASVSASA
SASASAKPNGRAPESFPDALVPLIEQIPSVLPRQSWRHISPACYVFFWSLQLGNLVWPQP
SYEAENKRLQAQIEEIKFERSDTRETTAAKKQKREELLNRHQQLVQEAKEGIERFSKTKL
HIVRQISAWFPGPLSQADATADALLAECILPRLQVSPVDAEYCFRLVKFLHEFSAPNFKL
VSLYDRLFQHNRLRALIFTCTVREAEHLARFLRFILGDLSRWHGSKSAYEREALGLKELR
GTKTHDYLGFATAFDADGKPAAFLDHGAFKELLFKWHKGLNSALRSCLNGTEWMHIRNAI
SVLKGVIDFFPTIDFMAHKFLEQLRTVTDRESASSSAHPDSLQGHRVDLSVTAQTTYSEL
QKRRSAWVSVQAFRPGSKSDKDEKKPAAPPFKPGSGGSARAPSSSEKEDGEVDESKTSGG
AAANKPSGAGAALPTREPPRDANAPARSGTATATNASRPPPPPPSSKQPPPKPELPSRPD
LPARFGQHGQPPRHDRRDAPPPRDSRDYRGTLGSRGTSIHATRGMLTVPGTAAITGRPML
PARTARTARTGRIAPGTSRCPNGAPLSRPAPAIPGRGSPARGIRRGARRETPGGLRIVGR
NPRRVGTTNETAARRVVPTAGLRRGSGAPLTNQAETIRGRRGILPPPAARRRLRLRPPIN
PERARLIDNDRPDLMKPARAALVGDPRESSRPSPREAPRERRAESPRRSDRPSAGSSSQP
DDRHGRHRHSPRPEPSREPHGEPAPPPRSERPGERDERRGGGGGGPRESFGGSQPRPDHD
HGRLSQQDPNYGRLIPIQSVADMPPNPPSGPRGRGGRNAARTGPANGPPMRSDARYPPPP
LEPIRPPTPERHPPTGPSASRPRRGGSGPYDGSVHSPTSAAPPALGMHPDRMRHLQGQPA
PSGPTGIHPDRLNQIGAQPAGPGPHPRPPMHTPDRPSMPAPNTGSRPTPSGPSADYPTTP
TGPAASSERMRPGGRQLRGIQNMLDKAQADAARGGPGLRSSRSRANLAGSDAQVLAGGSP
VGTPVHERPSESFRESSSFRRDTPRGTEPIQVVSDSRETGAAPPLPPPPSLPAGNPNSGN
GGHRGGAPNGGPAGPDDYSASRSEHDRSRREHHRSDRGGGGGGSGSGGSRPSRRSSRERS
PEGGRERDRERGDGHRERERERERDGHRDRDRDRERERDRERDRERDRERDRDGHRDRDG
RDHREARGGDAKDPRGDRDRDRGERGERDREREREREYRDRERERERERRSGAAGGMLAN
AAPAGSSASSSAGAGAGGARDEGRDPRRSAREPGPLRGGGGPRDSSTRGDRGDRGDHRDR
DYSARGGGGGGGGSSGGSGGSSIGERKRGGEIPPGGGGHHQDKRQRR
NT seq
7884 nt
NT seq
+upstream
nt +downstream
nt
atgcccccaaagcgcaagagaaccgatcgcggccccggcgatgccggcccgagaccctcg
ccgcatcgcccctccgacacggccctcggccagcacgaccgcagcttcgacggaggccgc
ggcggcggccgcggcggtcgtcacccgcgcagaggagaccgtcgcgattccatccagtct
ccgggcccagcctcgtcctttaccaacggtccttatccgcgatccccatccctaccgagg
ccttcgagcgccgcctcggccggagccgccccgatgcccacgccgtcattgcctccgcaa
gccccagcctcagcctcagcctcagcctcagctccagccccagctccagctccggccccg
gcgccgccgcaacagcagcaccatcgacaacaacagctacatgcccaaaagcttgcccct
ccggcgcctcccgcggccccgccgaccccgatccagcccttctacgactacaccgtcatc
accgacgaccgcgtcgcgcggtgggccaacggcggccggcaagaagtcgtcgaccatggc
gtccagtcgcgcaacgatgaggatcttaccgaggtggtcgtcatcttccaggagcttctg
cattccgtcaccggcggccgccttcagggcgccgatgcgggcgccgtcgtccgggaggtg
ctcggtcccgagccgtcccaggaggatcgcgacgccggcgccttcgacccccacaccttg
ttcctcgataccgtgtcgaccttcctcgacgtcgagtcgggccccctgctgccccagctc
cgcgacttcatggcggcctccgaggtctcgccggccctgatgcgcgccgtgctggacccc
ccgctcctgcagcacctcgacctgatccgcgacacgttcgtccgcatgggcatccgccag
tccaccaacctgctctaccgccaggccaactacaacctgctgcgcgaggagaccgagggc
ttctccaagctcgtcaccgagctcttcaccacgggcggctccgaccgcgccacctccgac
ctcgttcacgccaccttcaacaaggttatgggccttatcggcaccttcgacctgcacccg
ggccgcgtgctcgacgtcatcttcgacatctacgccgccgtgctcatcaagcagtgccgc
ttcttcatcaagttcctgcgcgtcagctcctggtggcctcgcagccagctggccctgccg
agcgactccttcgtcggcggcctgcccatctgggccctgccggaccacgccggcttcacc
accaccgacgacgaggaggccgtcctggccgagctgcgccggaagcgcgacgtcgccttt
tgggaccgcgcccgcgagatcaagctcgacgcctactttgagctgggcggccgccgagcg
accccccgcgccgccgacaaggagcgcctgaccaacggcggcggcggcggcgacgacgac
gacgacgacgacgacgacgcccaaaacggccccgaatccgacatcgagcgcgattggatt
cgcatcacaaagacgcgccctccccccggcaaccgggatgccgcccagctcctgggcttc
aagctgcgcttctacacgtccgaggcccgcgatcccgatgacaccctgccggccaacctc
ttctacctcatcgccctgctcatcaaggtcggcttcatctccctgacggacctgtggagc
cacgtctggccgcccgacgaggagatggaagaggtccgcctcaagaggttgaaggagctc
gaggagaaggaaaaggccagctggtccggcggcgagaagaacgccctgatgaccgccggc
gccctgcccgatgacatgccgccgccaccgacgacgacgacggcgacgacgacgatgacg
tcccaggctaacgcccgccgcgacgccgccgccgccgccggcggcccgaacggcgccaag
gcggaccccaacggcggcaacaaggcctcggagccggccgaaagcgacagcaaggccaag
ctgcccgagccttcggtccaaaaggtggaccttctcaagtgcctcctcaccatcggcgcc
cttcccgaagccctcttcatcctgggccgccacgagtggatcctcggcgcgtacccggac
gtcgtcgagctgctcaaccgcgtcctccaccagtccatcgacgccgtctaccgcgacagc
tgcccgaccccggcgcgggggccgtcgtccccttccgcggcgtgccctcccaaggcgcag
ctcgacgccgaccagtcgggcgtgcccaagggccgcgtcaagctcagcacgccgcccgtc
aagcgcgccctgcggtggccgttccccgacaggcccgacgtcggcgacggcgcctcgtac
cgcttctactgggacgagtgggccgacaacatacccgtctgccggaacgtcgacgacttc
ttcaccctgtgcgacaccctggtcaacgtcgtcggcgtcaacatcggcctcgacgccgcg
ctcgtggccaagatggcgagcatcggccgcaagagcctcgccgacgacccgtcccccgac
aaccagggccgctggctcgagctgctcaagcgcctgctggtgccctcgctgagcctcggc
gagcccaactcgtccgtggtcgacgccgtctggcacctcctcaggcggtatcccatccgc
acccgcttcaacgtctacgccgagtggtacgagggggccatctcgcgcctcgagcccatg
cgccacgccttcgcccggacgcgccgcgagacgctgagcaagatgaagcgcctctcgcac
agcaacatctaccagatggccaagagcctcgccaagatcgcctacccgtcgcccggcatc
gtgtgcaaggtggccctgctccagatcgaggcctacagcaacctgatcgaggcctttgtc
gagtgcgcaaagtacttcaccgacctcggctacgacgtgctcgtctggtccgtcctgagc
tccctcggcgaccagcagcgcagccgcactcaggagacgtcggtcctgctcacgagcaag
tggctgcaggccctgtcgcgcttctcgggcaaggtgtttgagcactactccaacatggac
ccctccccgatcctccgctacgtccacagccagctgctgcgcggcaactcgaccgacctc
gtcatcctcgaggagctcgtcatgtccatgggcggcgtcgtgtcgggcttcgacttcacc
gacgcccagctgcgcgccatgacgggcggcgacgtgctccgccgcgagaccctgctcggc
ctcggcgacaagcgcgccgtgtcgcagcggagcgccgcccgcctcatgaaggccctttcg
cactccaacctcgccggccagctgctcatcaacatcgcccagtaccgtcagaacgccatc
tacaccatcgccgacggcagcgcccgcatcaagtacctctcggccgtcgtcgacgacgcc
cacaaggttcttctccagtacctcgacctgctcgtcagcaacctcgacccggccgccttc
gacaggctgatccccgacgtcatccctctcatgcgcgactacggcctcgacgccaacctc
gccttcacgatccgccgcgcgagcatccgctgggacgccaaggctaccgcctccgccgcc
tccgcccccgccggcaccccgaaggagagcccaggaaagggcggcgcccacggcaacgcg
gcggccctgacggacggagacggcgacgtcgccatggacgcggacggcgcttcggcctcg
gacggcgaagccggcgccgccgacgacaacaacaacgccgcctccgtctccgcctccgcg
tccgcgtccgcgtccgccaagcccaacggccgcgcgcccgagtcgttccccgacgcgctc
gtcccgctgatcgagcagatccccagcgtcctgccccggcaatcgtggcgacacatctcg
cccgcctgctacgtcttcttttggtcgctccagctcggcaacctcgtctggccccagccc
agctacgaggccgagaacaagcggctccaggcccagattgaggagatcaagttcgaacgc
tccgacacccgggaaacgaccgccgccaagaagcagaagcgcgaggagctcctcaaccgc
caccagcagctcgtccaggaggccaaggaggggatcgagcggttctccaagaccaagctg
cacatcgtccgccagatcagcgcctggttccccgggcccctctcccaggccgacgccacg
gccgacgccctgctcgccgaatgcatcctcccgcgcctgcaggtctcgcccgtcgacgcc
gagtactgcttccgcctggtcaagttccttcacgagttctcggcgcccaacttcaagctc
gtgtcgctctacgaccgcctcttccagcacaaccgcctgcgcgccctcatctttacgtgc
accgtccgcgaggcggagcacctggcccgcttcctcaggttcatcctgggcgacctgtcg
cggtggcacggcagcaagagcgcctacgaaagggaagccctcggcctcaaggagctccgg
ggcaccaagacgcacgactacctcggcttcgcgaccgccttcgacgccgacggcaagccc
gccgccttcttggaccacggcgccttcaaggagctgctcttcaagtggcacaaggggcta
aacagcgccctgcggtcctgcctcaacgggaccgagtggatgcacatccgcaacgccatc
agcgtgctcaagggcgtcatcgacttcttcccgaccatcgacttcatggcccacaagttc
ctcgagcagctcaggaccgtcacggaccgcgagtcggcctcgtccagcgcccacccggac
tcgctccagggccaccgcgtcgacctctcggtcacggcccagacgacctactcggagctc
caaaagcgccggtcggcatgggtctccgtccaggcgttccggccgggcagcaagagcgac
aaggacgagaagaaacccgccgcgccgccgttcaagcccgggagcggcggttcggctcga
gcgccgtcatcctccgagaaggaggatggcgaggtcgacgagagcaagacgagcggcggc
gcagccgccaacaagccgagcggcgccggcgccgccttgccgacccgggagcctccgcgg
gacgccaacgccccggcgcggtccgggacggcgaccgccacgaacgcctcccggccgccg
ccgccgccgccttcttcgaagcaacccccgcccaagccggagctgccgagccggcccgac
cttccggcgaggtttggccagcacgggcagcctccgcggcacgacaggagggacgccccg
ccgcctcgggattcgcgcgactaccgggggaccctcgggagccgcgggaccagcatccac
gcgacgcgcgggatgctcacggtcccagggacggccgcgattaccgggcgcccgatgctc
cccgcccggaccgcccggaccgcccggaccggcaggatcgcccccgggacgtcccgttgc
ccgaacggcgcgcccctgagccgtccggcccccgcgattccgggccgagggagcccggcc
cgcgggattcgccgcggggctcgccgcgagacgccgggcggtcttcggatcgtcgggcgg
aacccccgccgcgtcggcacgacgaacgagacggccgcccggagggtcgttccgacagcc
ggcctccgccgagggagcggggcgccgctcacgaatcaagccgaaacgattcgaggccgg
cgcgggatcctgccgcccccagcggcccgccggcgcctgcgcctgcggccccccatcaac
ccggagcgggcgcgcctcatcgacaacgatcgccctgacctcatgaagccggcaagggcg
gctctcgtcggcgatccccgggaatcctcccgcccgtccccgagggaggcccctcgcgag
cggcgcgccgagtctcctcgacgctccgaccgcccgtctgccggctcctcctctcagccc
gacgatcgccacggccggcaccgtcattcgccccggccggagccgtcgcgagagcctcac
ggcgagcccgctcctccgccgcgctcggagcgccctggcgagcgcgacgaacgacgggga
ggcggaggaggaggacccagggagtcgttcggcggcagccagccccggcccgaccatgat
cacggaaggctcagccagcaggaccccaactacggccggctgattcccatccagtccgtc
gccgacatgcctcccaacccgccgtcgggcccgcgcggccgtggcggccggaacgccgcc
aggacgggcccggcgaacggccctcccatgcgctccgacgctcggtacccgccgcctccg
ctcgagccgatccggcctccgacgcccgagcgtcacccgcccacaggcccctcggcgtcg
cgtcctcggaggggcggcagcggcccgtacgatggaagcgtgcactccccgacgtcggcc
gctcctcccgccctcgggatgcaccccgacaggatgcgccacctccaagggcagcctgcg
ccgtcgggcccgacgggcattcaccccgaccgtctcaaccaaatcggcgcccagccggcg
gggcccggcccgcacccgcggcctcccatgcacacccccgaccggccgtccatgccggcg
cccaacacggggtcgcggccgacgccgtccgggcctagcgccgattaccccacgacgccg
accggccccgctgcgtcgagcgagcggatgcgcccaggtggccggcagcttcgcggcatt
caaaacatgctcgacaaggcccaagccgacgccgcgcgcggcggtccgggcctgcgctcg
tcgcgctcccgggccaacctggccggttccgacgcgcaggtcctggccggcggctcgccc
gtcggcacccccgtgcacgagcggccctccgaatccttccgcgagtcttcgtcgttccgc
agagacacgccgcgcggcaccgaaccgatccaagtcgtcagcgacagccgcgagacgggg
gccgcgccgccgctgccgccgccgccttctctgccggccggcaaccccaacagcggcaac
ggcggccaccgcggtggtgccccaaacggtggacccgctggcccggacgactatagcgcc
agccgctcggaacacgatcgttcgcgccgcgaacaccatcggtccgaccgcggcggcggc
ggtggtggtagtggcagcggcggaagccgcccatcccgccgtagcagccgcgagcggtct
cccgaggggggccgagaacgcgaccgcgagagaggcgatggtcacagggagagggagagg
gaaagggagagagatggacaccgcgatagggatcgcgatcgggagcgggagcgggatcgg
gagcgggatcgggagcgggatcgcgagagggatcgcgatggtcaccgcgatagggacggc
agggaccatcgcgaggcccgaggcggagacgccaaagacccgcgcggcgatcgcgaccgc
gacaggggcgagaggggggagagagatcgcgagagggagcgcgagcgcgagtaccgggac
cgggagcgggaacgcgagagggagcgccggtccggcgcggccggcgggatgctggccaac
gccgcccctgccgggtcgagcgcctcgtcgtcggcgggggcgggggccggcggcgcccgc
gatgaggggcgggacccgcgccggtccgcgcgcgagccgggccctctccggggcggcggc
gggcctagggactcttcgacccgcggagatcgcggtgatcgcggggaccatcgcgacagg
gactattcggcccgcggcggcggcggcggcggtggtggtagcagcggtggtagcggagga
agcagcatcggcgagaggaagcgggggggcgaaattcctcctggaggaggaggccaccac
caggacaagcgccagcgccgttag
DBGET
integrated database retrieval system
