KEGG   Remersonia thermophila: 98125945
Entry
98125945          CDS       T10833                                 
Symbol
VTJ83DRAFT_4775
Name
(RefSeq) hypothetical protein
  KO
K14327  regulator of nonsense transcripts 2
Organism
rthe  Remersonia thermophila
Pathway
rthe03013  Nucleocytoplasmic transport
rthe03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rthe00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    98125945 (VTJ83DRAFT_4775)
   03015 mRNA surveillance pathway
    98125945 (VTJ83DRAFT_4775)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rthe03019]
    98125945 (VTJ83DRAFT_4775)
Messenger RNA biogenesis [BR:rthe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     98125945 (VTJ83DRAFT_4775)
   mRNA cycle factors
    P-body specific factors
     98125945 (VTJ83DRAFT_4775)
SSDB
Motif
Pfam: MIF4G Upf2 IGPS TrAA12
Other DBs
NCBI-GeneID: 98125945
NCBI-ProteinID: XP_070866225
JGI: Remth1_4775
LinkDB
Position
4:complement(join(2246456..2246462,2246725..2246833,2246905..2247043,2247107..2247858,2247953..2250340,2250436..2250480,2250594..2250612))
AA seq 1152 aa
MDRARRYELRELNRRAWNGEKDLFPVGSSLDSTMKKNTGFIKRLRTAISPANLNTFLQEI
RTVSLSKYLSEIVSACHEGLCKLKSPGEIEAAVEIVSALHQRFGPADFTSYLGWFLGRSL
ATPDKSVLKALAPEVREKEEKDRLTRQRVLLRVVTELWLVDVLRTLDDVKRPDDTANGAT
GKQAEVRSRAAAKGGAAEPFPLEVLKDLLGHDREHVNLPLLVIFVKAFSWDVLGVKAPGS
EGRKTVEEDGATKTGDESGDGSGDGSGDGSGDGSGDQAAGAETEPAPAPEDPPLTPPELQ
ERFRSILRRYFDDVKNHLIRDQKAIYAQSRKNAEAYVKSGEVFEDRQANFEKQVKAQERL
VANAQVIADAIGAEMPDLKDHDDLSAGASSSIGIVKAGEYLRGQGDGPGIWEDEEERRFY
ENLVDLRGKVPGILLEEVKKKKPEDEQVGKKVDPAEAAEAAKAAEASANDQSVAIANKTI
GAQVDALLARLPDLTTKDAVDQMAVDFCYLNSKASRNRLVKALTDVPKGRGDLLPFWSRL
VATLGQYMSDVPKGLVDYLDAEFRSLQRRKEKEFLGQVRLGNIRYLAELTKFGIVPEHVV
FHCLKVSLDDFSRVNIEIICNLLENCGRYLLRNPETAPRMSTFLETLQRKKSVQHIGQAE
RMLIENAVYYVDPPQRPAIQQKERTPMELFVRKLVYSDLTKRNYSKILRQIRKLHWEEKD
VVALLHKVFSKPGRVKYGNIHLLAILLSAINRHHPDFVIGVIDCLVESIAFGLEQNDFEY
NQRRIAEVKYLAELYNYRMVEHPVIFDVMYKIMTFGYGGPPIPGRINPFDLPDDYFRIRL
IATLLETCGMFFNKGAAGKKLDYFLSFFQYYIFTKNPLPMDIEFLVQDIFAMTRPQWKLA
SNLEEATKAFQLAMAQDQKTSGADKAAEQEDDATSVAPSDDENDMAAEHDDDDDDESTGE
EPEADAEDAEPEGSYHGSESEGEAIVVTREEEQIDPEYEAEFDREYAKIMAESFETRKFQ
PKQFDIPLPVRPKAREQTGGSETGEAGAGSPGGTMAFSLLMKRGNRQQTRTVELPSDSQF
AVALINQRQAAKEEQQRIKNLVLNYDLRESEDYDARDDKPPSHHHHNRIDMRSGKERGQR
VRKLQLSDVDWT
NT seq 3459 nt   +upstreamnt  +downstreamnt
atggatcgcgccagacgatatgagctccgcgagctgaatcggagggcgtggaacggggag
aaggacctcttccccgtcggcagctcgctcgactccaccatgaagaagaacacgggcttc
atcaagcggctgcgaaccgccatttcccccgccaacctcaacacctttctgcaagagatc
aggaccgtcagcctgtccaaatacctctccgagatcgtctcggcctgccacgagggcctg
tgcaagctcaagtcgcccggcgagatcgaagccgccgtcgagatcgtcagcgccctgcac
cagcgcttcggacccgcagacttcacctcgtacctcggttggttcctcggccgctccctg
gccacccccgacaagagcgtgctcaaggctctcgcccccgaggtgagggaaaaggaggag
aaggaccgcctgacccgccagcgcgtgctcctgcgcgtcgtcaccgagctgtggctcgtc
gacgtcctgcgcaccctcgacgacgtcaagcgccccgacgacacggccaacggcgccacc
gggaagcaggccgaggtcaggtcccgcgccgctgccaagggcggcgctgccgagcccttt
cctctcgaggtcctcaaggacctcctcggccacgaccgggagcacgtcaacctgccgctt
ctcgtcatctttgtcaaggccttcagctgggacgtgttgggcgtcaaggcgcccggctcc
gagggccgcaagaccgtcgaggaggacggcgccaccaagacgggcgacgaatcgggcgac
gggtcgggcgacggatcgggcgacggatcgggcgacggatcgggcgaccaggccgccggc
gccgaaacggagcccgcgcccgcgcccgaagacccccctctgacgccgcccgagctgcag
gagcgtttccgcagcatcctcaggcgttactttgacgacgtcaagaaccacctcatccgg
gaccaaaaggccatctacgcccagtcgcggaaaaacgccgaggcctacgtcaagtcgggc
gaggtgtttgaggaccgccaggccaactttgagaagcaggtcaaggcccaggagcgcttg
gtggccaatgcccaggtcatcgccgacgccatcggcgccgagatgcccgacttgaaggac
cacgatgatctgtcggccggcgccagcagctccatcggcatcgtcaaggccggcgagtat
ctacgcggccagggagatggcccgggcatctgggaggacgaggaggagcgccgcttttac
gaaaacctcgtcgacctgcggggcaaggtccccgggatccttcttgaggaggtcaagaaa
aagaagcccgaagacgaacaggtcggcaagaaggtcgaccccgccgaagccgccgaggcc
gccaaggcggccgaggcgagcgccaacgaccagtccgtggccatcgccaacaagaccatc
ggcgcccaggtcgacgctctgctggcgcgcctgcccgacctcacgaccaaggacgccgtc
gaccaaatggccgtcgacttttgctacctcaactcgaaggcgtccaggaaccggctcgtc
aaggccctgacggacgtgcccaagggccgcggcgacctgctgccgttctggtcccgcctg
gtagccacgctgggccagtacatgtcggacgtccccaagggcctggtcgactacctcgac
gccgagtttcgcagcctgcagcgccgcaaggagaaggagttcctgggccaggtgaggctc
ggcaacatccgctacctcgccgagctgacaaagttcggcatcgtgccggagcatgtcgtc
ttccattgcctcaaggtcagcctggatgacttttcgcgcgtcaacatcgaaatcatctgc
aacctcctcgagaactgcggccgctacctcctgcgcaaccccgagacggcccctcgcatg
tccaccttcctcgagacgctgcagcgcaaaaagtcggtgcagcacatcggccaggccgag
cggatgctcatcgagaacgccgtctactacgtcgacccgccccagcgcccggccatccag
caaaaggagcgcacccccatggagctgttcgtccggaagctggtgtactcggatctcacc
aagcgcaactacagcaagatcctccggcagatccgcaagctccactgggaggagaaagac
gtggtcgccttgcttcacaaggtcttctccaagcccgggcgggtcaagtacggcaacatc
cacctgctcgccatcctgctgagcgccatcaaccggcaccacccggactttgtcatcggc
gtgatcgactgcctcgtcgaatccatcgcgttcggcctggagcaaaacgactttgaatac
aaccagcgtcgcatcgccgaggtcaagtacctggcggagctctacaactataggatggtc
gagcatcccgtcatctttgacgtcatgtacaagatcatgacgtttggatatggtggtccg
ccgatccccggccgcatcaaccctttcgaccttcccgacgactacttccgcatccgcttg
atcgccacgctgctcgagacgtgcggcatgtttttcaacaaaggcgcggcgggcaagaag
ctggactacttcctctccttcttccagtactacatcttcaccaagaacccgctgcccatg
gacatcgagttcctcgtgcaggatatctttgccatgacccggccccagtggaagctggca
tccaacctcgaggaggcgaccaaggcgttccagctcgccatggcccaggaccaaaagacg
tccggagccgacaaagccgccgagcaggaagatgacgccacgagcgtggcgccgtcggat
gatgaaaatgatatggctgcggagcatgatgacgacgacgacgacgagtctactggggaa
gagcccgaggccgacgccgaggatgccgaaccggaagggtcgtaccacggcagcgagtcc
gagggggaggcgatcgtggtcaccagggaggaagagcagatcgaccccgagtacgaagcc
gagttcgaccgcgagtatgccaagatcatggccgagagcttcgagactcgcaagttccag
ccgaagcagtttgatatcccgcttcccgtgcggccaaaggctcgcgagcagacaggcggc
agcgagacgggcgaggctggcgcgggaagcccgggaggcaccatggccttctcgctgctg
atgaagcgcgggaaccgccagcagacgaggacggtcgagcttccgtccgactctcagttc
gcggtggcgctgatcaaccagcggcaggcagccaaggaagagcagcagcgcatcaagaat
ctggtccttaattacgacctccgcgaaagcgaagattacgatgcacgcgatgacaaaccc
ccctcgcatcaccaccacaaccgcatcgacatgcggtcgggcaaggagcggggccagcgt
gtccgcaagcttcagctgagcgacgttgattggacctga

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