Remersonia thermophila: 98126221
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Entry
98126221 CDS
T10833
Symbol
VTJ83DRAFT_5022
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rthe Remersonia thermophila
Pathway
rthe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
98126221 (VTJ83DRAFT_5022)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98126221 (VTJ83DRAFT_5022)
03041 Spliceosome [BR:
rthe03041
]
98126221 (VTJ83DRAFT_5022)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
98126221 (VTJ83DRAFT_5022)
Spliceosome [BR:
rthe03041
]
Complex B
Other components
Prp19-related factors
98126221 (VTJ83DRAFT_5022)
Complex C
98126221 (VTJ83DRAFT_5022)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_8
TPR_15
RPN7
TPR_2
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
98126221
NCBI-ProteinID:
XP_070866472
JGI:
Remth1_5022
LinkDB
All DBs
Position
4:join(3128046..3128093,3128201..3128371,3128437..3130755)
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AA seq
845 aa
AA seq
DB search
MAPSLANSRQPDLALVAEDDFPYEQDIRRNLGSVKPWLAYIEYKLKHGTLREQAFVMERA
CVQLPRSYKLWKMYLRFRTKHVEKLNAAIFAAEYQKVNALFERALVLLNKMPRIWEMYLK
FLMQQPLVTVTRRAFDRALRALPITQHNRIWALYRPFANSAEGMTAVKIWRRYMQVHPED
AEDFIELLVQTGLYTEAVQKYIEILNNPRFQSKNTKGHYELWSEMVDLLVEHAVDIETGP
ESGIDVEQILRSGIERFSDQRGKLWVGLATYWIRRGNFERARDVFEEGITTVMTVRDFAL
VFDAYTEFEESVMGALMEVAQTRAAEGIVDEAADFDLDIRMMRFDHLMNRRPFLLNDVLL
RQNPNNVAEWEKRVALWGDNKDEVVKTYTDAIAAIQPKKAVGPFHQLWANYAKFYEKGGD
LRSARIIMEKAVKVPFKSVAELADMWIEWAEMELRNENFDEAVRIMAKAVQAPKRSTVDY
FDETLSPQQRVHKSWKLWSFYVDLVESVSSLDETRKVYERIFELRIATPQTVVNYANLLE
EHKYYEESFKIYERGLDLFSYPVAFELWNLYLTKAVDRKISIERLRDLFEQAVLDCPPKF
AKVIYLMYGNLEEERGLARHAMRIYERATRAVADEDRADMFNFYITKSASNFGLPSTRPI
YERAIATLPDNEARDMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTNPDFWQKWEQFE
VQHGNEDTFKEMLRIKRSVQAQYNTDVNFIASQALARQQQLLQQQQAQKSANGSGGGSGG
GGGSGGGGGDGEMDPEVADAMAQLERQARAPVGFVAASENLKGNVAAQPVEVANPDAINL
DEMDE
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggccccgagccttgccaattcgcgccagccagacctggctctggtggccgaggacgac
ttcccctacgagcaggacatacggcgaaatcttgggagcgtaaagccgtggctggcctac
attgagtacaagctcaagcatggcacgctacgggagcaggccttcgtcatggagagggcc
tgcgtccagctcccgcgatcgtacaagctgtggaagatgtatctccggttcaggacgaaa
cacgtcgaaaagctcaacgccgccatcttcgccgccgagtaccaaaaggtcaacgccctg
ttcgagcgcgccctcgtcctcctcaacaagatgcccaggatatgggagatgtacctcaag
ttcctcatgcagcagcccctcgtgaccgtcacccgccgcgccttcgaccgggccctccgc
gccctccccatcacccagcacaaccggatatgggccctgtaccgccccttcgccaactcg
gccgagggcatgaccgccgtcaagatctggcgccgctacatgcaggtccaccccgaggat
gccgaggacttcatcgagctgctggtccagacgggcttgtacaccgaggccgtccaaaag
tacatcgagatcctcaacaacccgcgcttccagagcaaaaacacaaagggccactacgag
ctgtggagcgagatggtggacctgctggttgagcacgccgtcgacatcgagacgggcccg
gagtcgggcatcgacgtggagcagatcctccgcagcggcatcgagcgcttcagcgaccag
cgaggcaagctctgggtcggcctggccacctactggatccgccgcggcaacttcgagcgc
gccagggacgtgttcgaagaaggcatcaccaccgtcatgacggtccgcgacttcgccctc
gtcttcgacgcctacaccgagttcgaggagtccgtcatgggcgccctcatggaggtggcg
cagacccgcgccgccgagggcatcgtcgacgaggccgccgacttcgacctcgacatccgc
atgatgcgcttcgaccacctcatgaaccgccgcccgttcctgctcaacgacgtgctgctg
cgccagaaccccaacaacgtggccgagtgggagaagcgcgtggccctgtggggcgacaac
aaggacgaggtggtcaagacgtacacggacgccatcgccgccatccagcccaagaaggcc
gtcggccccttccaccagctgtgggccaactacgccaagttttacgaaaagggcggcgac
ctgcgcagcgcccgcatcatcatggagaaggccgtcaaggtgcccttcaagtcggtcgcc
gagctggccgacatgtggatcgaatgggccgagatggagctgcgcaacgaaaactttgac
gaggccgtccgcatcatggccaaggcggtgcaggcgcccaagcgctccaccgtcgactac
tttgacgagacgctctccccgcagcagcgcgtccacaagagctggaagctctggagcttc
tacgtcgacctcgtcgagagcgtgagctccctcgacgagacccgcaaggtgtacgagcgc
atcttcgagctccgcatcgccaccccgcagaccgtcgtcaactacgccaacctgctcgag
gagcacaagtactacgaggagtcgttcaagatttacgagcgcggcctcgacctcttcagc
taccccgtcgcctttgagctgtggaacctgtacctcaccaaggccgtcgaccgcaagatc
agcatcgagcgcctgcgcgacctctttgagcaggccgtgctcgactgcccgcccaagttc
gccaaggtcatctatctcatgtacggcaacctcgaggaggagcgcggcctggcccgccac
gccatgcgcatctacgagcgggccacccgcgccgtcgccgacgaggaccgcgccgacatg
ttcaacttttacatcaccaagtcggcctccaactttggcctgccctcgacgcggcccatc
tacgagcgcgccatcgccaccctgcccgacaacgaggcccgcgacatgtgcctcaagttc
gccgacatggagaagcgcctcggcgagatcgaccgcgcccgcgccatctacggccacgcc
tcgcagttctgcgacccgcgcaccaacccggacttttggcaaaagtgggagcagttcgag
gtccagcacggcaacgaggataccttcaaggagatgctccgcatcaagcgcagcgtccag
gcgcagtacaacaccgacgtcaacttcatcgcgtcccaggccctggccaggcagcagcag
ctgctgcagcagcagcaggcgcagaagtcggccaacggcagcggcggcggcagcggcggt
ggtggtggtagtggaggaggaggcggagatggagagatggacccggaggttgccgatgcc
atggcgcagctggaacgccaggcgcgcgcccccgtcggtttcgttgccgcttccgagaat
ctcaagggaaacgtcgccgcccagccggtcgaggtggccaacccagacgctatcaacctg
gacgagatggacgaatga
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