Remersonia thermophila: 98126699
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Entry
98126699 CDS
T10833
Symbol
VTJ83DRAFT_5453
Name
(RefSeq) hypothetical protein
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
rthe Remersonia thermophila
Pathway
rthe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
98126699 (VTJ83DRAFT_5453)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98126699 (VTJ83DRAFT_5453)
Enzymes [BR:
rthe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
98126699 (VTJ83DRAFT_5453)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
98126699 (VTJ83DRAFT_5453)
mRNA degradation factors
3'-5' decay
Pan complex
98126699 (VTJ83DRAFT_5453)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_THOC3
WDR55
VPS11_N
Beta-prop_WDR3_2nd
EIF3I
Motif
Other DBs
NCBI-GeneID:
98126699
NCBI-ProteinID:
XP_070864828
JGI:
Remth1_5453
LinkDB
All DBs
Position
5:join(822856..822876,823025..823132,823234..823409,823547..824266,824343..825016,825085..825783,825858..827047)
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AA seq
1195 aa
AA seq
DB search
MEADWDEVARIAFPAPGTADFPRPATAVAFDTIAELLWAGDDRGRVSSFYGRDLQRYTAF
KIHPPSEGPVHQFLFHDKGVIALGSRSVHMAMRRGPALWNIRHEGMKNLRCMSFTSKGAS
EIIVAGLQDAMFVIDVVKGEIVKQVPTEHHYTIMKKSKYICAATRTGCVDMLDPISFKIV
RSWQAHASYINDMDAQKDFIVTCGGSVKQQAAQTYMLDPYVNVFDLKNMTSMKPMPFPAL
AAHVRLHPRMLTTSIVTSQHGQMHVVDIMNPNSSTVRYANVTSFINLFEMAPSGEAMVMA
DAECNIHLWGSPSKIRFTDVALPLEMPKVEEPAPMLDWSMDTPLSSIGMPYYREQLFSAW
PPDIVSDVGAPPVQVDPAFLATLKQAEWGWYGRNTRGLRRNQVENTRVTSKPALQPPKFL
SEKARESALAAGNGAAADAKAEEHLDDASPPGEIESLKPEAPPMYRIFEIKYSKFGVDDF
DFGYYNKTPYAGLENHIPNSYANALLQLMHFTPLLRNMALQHAATACVSELCLLCELGFV
FDMLQKADGAPCQATNMFKALSATPQAGPLGLLEEETHISSLAAMSQGLSRFLFDRITHE
YRSLPPVSTALEQDIFNLPQPPTPDELVSKVLATSAVITIKCTNCRNETTRSGTSYVNDL
IYPATKAPVRGGRAPKTTFSQLLKMGVERETGSKGWCSRCQRYQNLQMRKTIHNVPAVLA
VNTAITTAEHRRLWATPGWLPEEIGVIVDQGQFFCFEGEDLKLHLQRGIHNITVYSLIGM
VVNIESNTPQKTHLVSLVNVAHAEPTPPAESKWYLFNDFSVRPVSAAEALTFNATWKMPT
VVMFQVKAANNKSNPDWKTKMDTSLLYRDLTPPHPDTKTYRVLDEGSERPGPDTIVAIDT
EFVSLKQPEIQMNSDGEREMIRPMSHALARVSVVRGQGEHEGEAFIDDYIAIREPVVDYL
TLYSGITALDLDPRTTKHNLVSLKLAYKKLWVLLNLGCKFLGHGLRQDFRVINIHVPPAQ
VIDTIQVFYLKSRLRKLSLAFLAWYLLKEDIQLETHDSIEDARTALKLYRKYLEFEDAGI
LEAMLEDIYKAGRATNFKPPRKDDGGGGCGGGSGSGHGQGARTDTPSAELAAAGGPGPGG
GGGGGGNGTGSAPSTPARKPAGLAAGPGQQGGPSTPSFGGGVNLFSPSKMSSPLK
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagattgggacgaggtcgctcgcatcgccttcccggcgccgggtaccgccgac
ttcccccgcccggccaccgccgtggccttcgacaccatcgctgagctcctctgggccggc
gacgatcggggccgcgtctcatccttctacggccgcgatctccagcgctacaccgccttc
aagattcacccgccctccgagggccccgttcaccagttccttttccacgacaagggcgtc
atcgccctcgggagccggagcgtgcacatggccatgaggaggggtcccgccttgtggaat
atccgacacgagggcatgaagaacttgcggtgcatgtccttcacgtccaagggcgcctcc
gagatcatcgtcgccggcctccaagacgccatgttcgtcatcgacgtggtcaagggggag
atcgtcaagcaggtcccgaccgagcatcactacaccatcatgaagaagagcaagtacatc
tgcgccgccacccgcaccggctgcgtcgacatgctcgatcccatctccttcaagatcgtc
cgcagctggcaggcccacgcctcctacatcaacgacatggacgcccaaaaggacttcatc
gtcacctgcggcggctccgtgaagcagcaggcggcccagacctacatgctcgacccctac
gtcaacgtcttcgacctcaaaaacatgacgtccatgaagcccatgccgttcccggccctg
gcggcccacgtccggcttcacccccggatgctgaccaccagcatcgtcacctcgcagcac
ggccagatgcacgtcgtcgacatcatgaaccccaactccagcaccgtccgctacgcaaac
gtcacctccttcatcaacctcttcgagatggccccctcgggagaggccatggtcatggcc
gatgccgagtgcaacatccatctctggggctccccttccaagatccgcttcaccgacgtg
gccctgcctctcgagatgcccaaggtcgaggagccggcccccatgctggactggtccatg
gatacgcccctgagctccatcggcatgccctactaccgcgagcagctcttctccgcgtgg
ccccccgacatcgtctccgacgtgggcgctccgccggtccaggtggacccggccttcctg
gcgacgctcaagcaggccgaatggggatggtatggcagaaacacgcgtggcttgcgccgt
aaccaggtcgagaacacgcgcgtcaccagcaagccggccctgcagccccccaagttcctg
agcgagaaggcccgcgagtccgccctggcggcagggaacggggccgcggcggacgccaag
gcggaagagcacctcgacgacgcctcgccccccggcgaaatcgagagcctgaagcccgag
gccccgcccatgtaccgtatcttcgagatcaagtacagcaagttcggagtcgacgacttc
gactttgggtactacaacaagacgccctacgcgggcctggaaaaccacattcccaactcg
tacgccaacgccctgctgcagctgatgcacttcacgcctctgctgcgcaacatggcgctc
cagcacgccgccaccgcctgcgtgagcgagctgtgtctgctgtgcgagctgggcttcgtc
ttcgacatgctccagaaggccgacggcgccccgtgccaggcgaccaacatgttcaaggcg
ctgagcgccacgccgcaagccgggcctctcggcctcctcgaggaggaaacccacatctcg
tccttggcggccatgtcgcaggggctgagccgcttcctcttcgacaggatcacccacgag
taccggagcctgccccccgtgtcgacggccctggagcaggacatcttcaacctgccgcag
ccgccgacgcccgacgagctggtgtccaaggtcctcgccacgtccgccgtcatcaccatc
aaatgcaccaactgccggaacgagaccacgcggtccggcacgtcgtacgtcaacgacctc
atctacccggcgaccaaggccccggtccgcggcggccgggcgcccaagacgaccttttcg
cagctgctcaagatgggcgtcgagcgcgagacggggtccaagggctggtgcagccgctgc
cagcggtaccagaacctccagatgcgcaagaccatccacaacgtgccggccgtgctcgcc
gtcaacacggccatcacgacggcggagcatcgccggctctgggccaccccgggctggctc
cccgaggagatcggcgtcatagtggaccagggccagttcttttgcttcgagggcgaggac
ctgaagctccatctccagcgcggcatccacaacatcacggtctactcgctcatcggcatg
gtggtcaacatcgagagcaacacgccgcaaaagacgcatctcgtgagcctcgtcaacgtg
gcgcacgcggagccgacgcccccggccgagagcaagtggtatctcttcaacgacttttcc
gtgcggcccgtgtcggcggccgaggccttgaccttcaacgccacctggaagatgccgacg
gtggtcatgttccaggtgaaggcggccaacaacaagagcaacccggactggaagaccaag
atggacacgtccctcctctacagggatctgacgcccccgcaccccgacaccaagacgtac
cgggtgctcgacgaagggtcggagcggccgggccccgacaccatcgtggccatcgacacc
gagttcgtttcgctcaagcagcccgagatccagatgaactcggacggcgagcgcgagatg
atccgccccatgtcccacgccctcgcccgcgtctcggtcgtgcgcggccagggcgagcac
gaaggcgaggccttcatcgacgactacatcgccatccgcgagcccgtcgtcgactacctg
acgctgtacagcggcatcaccgccctggacctcgacccgcgcacgaccaagcacaacctc
gtctccctcaagctcgcctacaagaagctgtgggtcctgctcaacctcggctgcaagttc
ctcggccacggcctgcggcaggacttccgcgtcatcaacatccacgtgccgcccgcccag
gtcatcgacaccatccaggtcttctacctcaagtcgcgcctgcgcaagctgtccctggcc
ttcctcgcctggtacctgctcaaggaggacatccagctcgagacgcacgactccatcgag
gacgcccgcaccgcgctcaagctctaccgcaagtacctcgagttcgaggacgcgggcatc
ctcgaggccatgctcgaggacatttacaaggccggccgcgccaccaacttcaagccgccc
cggaaggacgacggcggcggcggctgcggcggcggcagcggcagcgggcacggccaggga
gcgaggacggatacgccctcggcggagctagcagccgcaggaggaccaggaccaggagga
ggaggaggaggaggagggaacggtacgggttcggccccgtccacgccggcgaggaagccc
gcggggttggcggcggggccgggacagcaggggggcccgagcaccccgagctttggcggc
ggggtgaacctcttttcgccgtccaagatgtcctcgcctctcaagtga
DBGET
integrated database retrieval system
