Remersonia thermophila: 98126713
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Entry
98126713 CDS
T10833
Symbol
VTJ83DRAFT_5466
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rthe Remersonia thermophila
Pathway
rthe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
98126713 (VTJ83DRAFT_5466)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98126713 (VTJ83DRAFT_5466)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
98126713 (VTJ83DRAFT_5466)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
98126713 (VTJ83DRAFT_5466)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_HEAT
CNOT1_TTP_bind
PUL
Motif
Other DBs
NCBI-GeneID:
98126713
NCBI-ProteinID:
XP_070864841
JGI:
Remth1_5466
LinkDB
All DBs
Position
5:complement(join(865265..865306,865381..871334,871414..871747,871964..872221))
Genome browser
AA seq
2195 aa
AA seq
DB search
MVPQPRPGTFSPNPSTQPIHTGIAHSPHPSHAGALSAGASPSTSSPTQSNSLTKIAVAQV
YLLLSTIKEDKDDPNKFQSQIESLRKLLDEHGMDVFTRYFSRLVAANAPQIFPGLNRPVA
NPGNPGNRHLIAAELQKLHDDFSQARKIAESIETGTEDIFRDFDLSTFMEHFQLDALQKT
LLALAFKLGSRQDLRTKADAILSTNFPTFVNILSRANGEYPNLKPDFVAELLDRFIQVHP
PNFNAAAKRELEHKVQLRYTPSQEGKPPPSQVLAALDLMRLLADKPPNALALYIHRTGST
FTADEETCRTFLQNRSSNVHLSEEQVSVALMYTAISQTPRHNTSVLVAALRRVLPDSFRW
QDVVSYFDHSGARVTSAQFLRLYSALLPIAKEDPDRFNIQRLWGGEWENPETQLSFICAF
ASLKPEELDATTIPGLKPTFTVQEYANSPASVRETAAYAVKHPLVSEAALSAVFSVALHS
MHASQSIEARRLFQDVVIHNLAIFVVSAFGVPKPWPSMAEDTLVSLFDNFLTRSPEADFV
MDSLWRRDKEWVKQRLIDVHALKPISLPLIFEHAVRQNWLDELVSMPVGFSLDLAALAHA
EGYLDLQQWARRNADRGSEFAKALLQFLLIKANFELQYQRPPEGHPPVKQSTTLQVRTVH
ALLQILEEFLPKTPMQELIVVQRSCITVYPRLINYGEGFDDIIDANGRDGNALPAAANVK
MEEHYKKMYGDEIQVRNVVEILEGYKRSRDPLDQDIFACMIHGLFDEYAHYVDYPLEALA
TTAVLFGGIISHKLISDLPLQIGLGMILEAVRDHHPEESMYKFGLQALMQLFGRLREWPG
FCAQLLQIPGLQGTEAWKKAEEVVREHDEELARSRNGSSAGVIGHDGALPNGNADDGRAA
EQHPPPFASVNVDPPPPGVVYEDPSEEVQGKVQFVLNNLTDTTVQPMTKEIRDMLEPKHQ
QWFASHLVEERAKMQPNYHHVYLELVKLFEDKALWDEVLRQTFFSVARMLNSEATMQNST
ERTHLKNLGGWLGLLTLARDKPIKHKNIAFRQLLIEAHDTKRLIVVIPFVCKVLIQGASS
NVFRPPNPWLMDIIHLLIELYHNAELKLNLKFEIEVLCKGLNLDHKSIEPSGEILNRAPL
EELGADMIGHEALDNFENLSLNGMPGVSSGLAHPAFAIPDLGPSLSIPQTEVVSAAKLHE
IVRQALTRALQDIIQPVVDRSVTIAAISTHQMVRKDFAIEPDENRLRTAAINMVKSTAGS
LALVTSKEPLRANLANYLRNLSADLPQGLPEGIIMLCVNSNLDLASSIIEKFAEERAVPE
IEEMIEPELEARRRHRLQRPNEPYIDPSLSRWAMTIPHPYKLQPNISGLNAEQMAIYDDF
ARQSRASAAAAAAAAAGPVHVPTASETRALPGEGLGDQFGGVSTMGTPAETPSMPHLGVQ
LQHYPQAQVGLANGRQAALSQIDSRSIAERINKLLEQLTAAAAGSSEEHFGDLPRSHPVL
DLVDALVQLIIKTQQTSDDFAAYAANQIAQLLFRQPEGDLLLECLVHVLETLRKIAGPVI
NEQVRQFFHQQPGHLFLHLPLITALLPTDLLDWHNIDVAVAKLLLQRKEGSLAFLEQLMD
LTLLNDSPYALYADFVRSLEEAWAWIAEDPETPGAARFRFKLLAAPPEPAANLSQDELAA
MQLDQMDYIFDEWVQLCSYRQPSERTAAMFVQQMRARQVVRNREDFLIFTRHALDKSVER
FEHIVQSGGSLTEGYQGIEALVKLVMVFVASHQESEDGNQSSAVAFLESVVSLGVLVLSS
HHLKRGEAFNQRVFFRFFALILHEVAEMSGRLQDSEHQRFILHFAARLYDIRPAVSPGFL
FGWAELLAHRGFLPVIIRLPEQAGWAPLTKLLTQLLSYLGELLKPLAVSPLAKGLYHGVL
KLLAVLHHDFPEYLSAAHVELCQSLPPHTTQLINFILSATPAAFNKQADPYQAGLKVDKI
PEMKDAAPSTFDPAGVLREIGLLEIVEQVLQNGPSEDAIAQINHAINKTDKEETAFGNVP
VGVNRRVIDAVMAQFARFAAARAASSKGDVFVPGAADFKALRMLITEVSPEARYYLASSM
INELRFPCAATNYFSHAVVEIFGHDMSDPEETDIRQQIIRIALERLIGYWPQPWGLIVTA
VELMKNEKYQFFELPFIKAIPEVAQRFAEVLRATQ
NT seq
6588 nt
NT seq
+upstream
nt +downstream
nt
atggtccctcaacccagaccgggaaccttctcgccaaacccatcaacccagcccatccac
actggcatcgcccactcgccgcatccctcccacgccggtgcgctgagcgcgggtgccagc
cccagtaccagcagtccgacacagtccaactccctgacaaagattgccgtcgcccaagtc
taccttctcttgagcaccatcaaggaggataaggacgatccgaacaagtttcagtctcag
attgagtcgctgcgaaagctgctcgatgaacacggaatggatgtgtttacaagatacttc
tctcgactggtggccgccaatgcgccccagatcttccccggcctcaaccggcccgtagcg
aacccgggcaacccggggaaccgccatctcatcgcggcagagctccagaagctgcacgac
gacttctcccaggccagaaagattgccgagtcgatcgagacgggcaccgaggacatcttc
cgcgacttcgacctctccacatttatggagcatttccagctcgacgccctacagaagacg
ctgctcgctcttgcgttcaagctgggatcccggcaagacttgaggaccaaagccgatgcc
atcctatcgacaaacttccccaccttcgtcaacatcctcagccgcgccaacggagagtac
cccaacctcaaacccgacttcgtcgccgagcttctcgaccgcttcatccaggtccacccg
cccaactttaatgcggcagcgaagcgggaactggaacacaaggtccagctgaggtacacg
ccgtctcaagaaggcaagccgcccccttcgcaggtgctcgccgccctcgacctcatgcgc
ctcctcgccgacaagccgccgaatgccctcgccctctacatccaccgcaccggctcaacc
ttcaccgccgacgaggagacgtgccgcaccttcctgcaaaaccggtcttccaatgtccac
ctcagcgaggagcaggtctcagtcgctttgatgtacacggccatcagccagaccccgcgc
cacaacacgtccgtgctcgtcgccgcgctccggcgcgttctgcccgacagcttccgctgg
caggatgtcgtgtcgtatttcgaccacagcggcgcccgcgtcacgtcggcccagttcctg
cgcctctactcggcgttgctgcccatcgccaaggaggatcccgaccgcttcaacatccaa
cgtctgtggggcggcgagtgggaaaaccccgagacgcagctctccttcatctgcgccttc
gcgtcgctcaagcccgaggagctggatgccacaaccattcccgggctgaagccgaccttc
acggtccaggagtacgccaactcgcccgcctcggtacgagagacggccgcctacgccgtc
aagcatcccctggtctcggaagccgccctgtcggccgtcttcagcgtcgccctccactcg
atgcatgcctcgcagagcatcgaggcccggcgcctcttccaggatgtcgtgatccataac
ctggccatcttcgtcgtctcggcgttcggcgtgcccaagccctggccgagcatggccgag
gacacgctggtctcgctctttgacaacttcctgaccaggtcgcccgaggccgacttcgtc
atggacagcctctggaggagggacaaggagtgggtcaagcagcggctcatcgacgtgcac
gctctcaagcccatcagcctgcccctcatctttgagcacgccgtccgccagaactggctg
gacgagctcgtcagcatgcccgtcggcttcagcctcgacctggccgccctggcccacgcc
gaaggatacctcgacctgcagcagtgggctcgccgaaacgccgacaggggctccgagttc
gccaaggcgcttctccagttcctgctgatcaaggccaactttgagctgcagtaccagcgc
ccccccgaaggccatccgcccgtcaagcagagcaccaccctgcaggtccgcaccgtccac
gccctgctccagatcctcgaggagttcctgcccaagacccccatgcaggagctcatcgtc
gtgcaacgcagctgcatcacggtgtatccccggctgatcaactacggcgagggcttcgac
gacatcatcgacgccaacggccgtgatgggaacgccctgccggcggccgccaacgtcaag
atggaggagcactacaagaagatgtacggcgacgagatccaggtgcgcaacgtggttgag
atcctcgagggctacaagcggtctcgcgacccgctcgaccaagacatcttcgcctgcatg
atccacggcctgttcgacgagtacgcgcactacgtggactaccccctcgaggccttggcg
accaccgccgtcctcttcggcggcatcatctcgcacaagctgatctcggacctgccgctc
cagatcggcctgggcatgatcctcgaggccgtcagagaccaccacccggaggagtccatg
tacaagttcggcctgcaggccctgatgcagctctttggccgcctgcgcgagtggcccgga
ttctgtgcccagctcctccagatccccggcctccaaggcaccgaggcgtggaagaaggcg
gaggaggtggtccgcgagcacgacgaagagctcgcccgctcgcggaacggcagcagcgcc
ggggtgatcggccacgacggcgcccttcccaacggcaacgcggacgacgggcgcgccgcc
gagcagcacccgccgcccttcgcgtcggtcaacgtcgacccgccgccgccgggcgtcgtc
tacgaagacccgagcgaggaggtgcagggcaaggtccagttcgttctcaacaacctcacc
gacaccacggtgcagcccatgaccaaggagatacgcgacatgctggaacccaagcaccag
cagtggttcgccagccacctcgtcgaggagcgagccaagatgcagcccaactaccaccac
gtctacctcgagttggtcaagctctttgaagacaaggctctctgggacgaggtcctgagg
cagaccttcttcagcgtcgcgcgcatgctcaactcggaagcgaccatgcagaactcgacg
gaaaggacgcacctcaagaacctcggaggctggctcgggctgttgacgctggcccgcgac
aagcccatcaagcacaaaaacattgccttccggcagctgctgatcgaggcccacgacacg
aagcgcctgatcgttgtcatccccttcgtgtgcaaggtcctgatccagggcgcctcgtcc
aacgtcttccggccgccgaacccttggctgatggacatcatccacctgctgatcgagctg
taccacaatgccgagctcaagctcaatctcaagttcgagatcgaggtgctgtgcaagggg
ctcaatctcgaccacaagtccatcgagccgtccggagagatcctcaaccgcgcccccctg
gaggagcttggcgccgacatgatcgggcacgaggccctggacaacttcgagaacctctcc
ctcaacggcatgcccggcgtcagcagcggcctggcgcatccggccttcgccatccccgat
ctcggccccagcctgtcgatccctcaaaccgaagtcgtcagcgccgccaagctgcacgag
atcgtccgccaagccctgacgagggccctgcaggacatcatccagccggttgtcgaccgc
tccgtgacgattgccgccatctcaacccaccagatggtgcgcaaggacttcgccatcgag
cccgacgagaaccgtctgcggacggcggcgatcaacatggtcaagtccaccgccggcagc
ctggcccttgttacgtccaaggagccgctgcgagcgaacctggccaactatctccgcaac
ctgtcggccgaccttccgcagggcttgcccgagggcatcatcatgctgtgtgtgaactcg
aatctcgacctggcctcgagcatcatcgaaaagttcgccgaggagcgcgccgtcccggag
atcgaggagatgatcgagcccgagcttgaggcccgccgccggcacaggctccagcggccc
aacgagccctacatcgaccccagcctgagccgttgggccatgaccattccgcacccgtac
aagctgcagcctaacatcagcggcctgaacgcggagcagatggccatctacgacgacttc
gcccgccagtcgagggccagcgcggcggcggccgccgccgccgctgcgggtcccgtccac
gtgccgaccgcctcggagacccgcgccctgcccggcgagggcctcggcgatcagttcggc
ggcgtcagcaccatgggaacgcccgccgagacgccgtcgatgccccatctcggggtgcag
ctccagcactacccgcaggcccaggttgggctggcgaacggccggcaagcagccctcagc
cagatcgactcgcggagcatcgccgaaaggatcaacaagctcctggagcagctgacggcc
gccgcggccggctcctcggaggagcatttcggcgaccttccccggtcccacccggttctg
gacctggtcgacgccctggtgcagctcatcatcaagacgcagcagacgtcggacgacttc
gccgcctacgccgccaatcagatcgcccagctcctgttccgccagcccgagggagacctg
ctgctcgagtgtctggttcacgtcctcgagacgctccgcaagatcgctgggcccgtgatc
aacgaacaagttcgccagttcttccaccagcagcccggccacctcttcctgcacctgccc
ctcatcacggcgctgctccccaccgacctcctcgactggcacaacatcgacgtcgccgtg
gccaagctgctgctgcagcggaaggaagggtccctggcgttcctcgagcagctcatggac
ctgacgcttctcaacgacagcccgtatgccctctacgccgactttgttcgcagcttggag
gaggcgtgggcgtggatcgccgaagaccccgagacgccgggcgccgcgcggttccggttc
aagctgctcgccgctcccccggagcccgccgccaacctgtcccaggatgagcttgccgcg
atgcagctggatcagatggactacattttcgacgagtgggttcagctctgcagctatcgc
cagccctcggagaggacggcggccatgtttgtccagcagatgcgcgcccgtcaggtggtg
cgcaaccgcgaggacttcttgatctttacgcgccacgctctcgacaagtcggtcgagcgc
ttcgagcacatcgtccagtccggcggcagcctgaccgagggctaccaggggatcgaggcc
ctcgtcaagcttgtcatggtgttcgttgcgtcccaccaggagagcgaggacggcaaccaa
tcatcggccgtggcgttcctcgagtcggtcgtgtcgctgggcgtgctcgttctgagcagc
catcacctcaagcgcggggaggccttcaatcagcgcgtcttcttccgcttcttcgccctc
atcctccacgaggtggccgagatgtccggtcggctgcaggacagcgagcaccagcgcttc
atcctgcactttgcggcccgcctctacgacatccggcctgccgtctctcccggattcctc
tttggctgggccgagctcttggcccaccgcggtttcctgcccgtaatcatccggctcccc
gagcaggctggctgggcgccgctcaccaagctcctgacgcagcttctgtcgtatcttgga
gagctcctgaagccgctggccgtctcgccgcttgccaagggcctgtatcacggagtcctc
aagctgctggcggtccttcaccacgacttccccgaatacctctcggctgctcacgtggag
ctctgccagagcctgccgcctcacaccacgcagctcatcaacttcatcctctcggccacc
cccgccgccttcaacaagcaagccgacccctaccaggccggcctcaaggtggacaagatt
ccggagatgaaggacgccgcgccgtcgacgttcgacccggccggcgttctgcgcgaaatc
ggcctgctggagattgtcgagcaggtgctgcagaacggcccgtccgaagatgccatcgcc
cagatcaaccacgccatcaacaagaccgacaaggaggagacggcctttggcaacgttccc
gtcggcgtcaaccggcgcgtcatcgacgccgtgatggcgcagtttgcgcggttcgcggcc
gcccgtgccgcctcctccaagggcgacgtgttcgtcccaggagccgccgacttcaaggcg
ctgcgcatgctcatcacggaggtgtcgcccgaggcccgctactacctggccagcagcatg
atcaatgagctgcgcttcccctgcgcggcaaccaactacttcagccacgccgttgttgag
atctttggacacgacatgtcggacccggaggagacggacatccggcagcaaatcatccgc
attgcgctcgagcggctgattgggtactggccgcagccgtgggggctgatcgtcacggcg
gtggagctcatgaagaatgagaagtatcagttctttgagctgccgtttatcaaggcgatt
ccggaggtcgcacagcggtttgctgaggtgcttcgcgccacgcagtga
DBGET
integrated database retrieval system
