Remersonia thermophila: 98127279
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Entry
98127279 CDS
T10833
Symbol
VTJ83DRAFT_5976
Name
(RefSeq) hypothetical protein
KO
K12828
splicing factor 3B subunit 1
Organism
rthe Remersonia thermophila
Pathway
rthe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
98127279 (VTJ83DRAFT_5976)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rthe03041
]
98127279 (VTJ83DRAFT_5976)
03036 Chromosome and associated proteins [BR:
rthe03036
]
98127279 (VTJ83DRAFT_5976)
Spliceosome [BR:
rthe03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
98127279 (VTJ83DRAFT_5976)
Complex B
98127279 (VTJ83DRAFT_5976)
Complex C
U2 SnRNP specific factors
98127279 (VTJ83DRAFT_5976)
Chromosome and associated proteins [BR:
rthe03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
98127279 (VTJ83DRAFT_5976)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
HEAT_EZ
TOR1L1_N
HEAT_EF3_N
HEAT_2
Htt_N-HEAT_1
mTOR_dom
Adaptin_N
UTP20
XMAP215_CLASP_TOG
UNC45-central
Motif
Other DBs
NCBI-GeneID:
98127279
NCBI-ProteinID:
XP_070865351
JGI:
Remth1_5976
LinkDB
All DBs
Position
5:complement(2714837..2718523)
Genome browser
AA seq
1228 aa
AA seq
DB search
MSDAEFEQIRKLQAERNAAAAAKKGSRTFDPANQRPDASTKARLTEAWDTDLYDRDNGDK
FAGYHRELPGADADDDDMPDADADAAAGTRRLVGQYTATRAQIDEFARGAGVEEDDPLAG
RGERSNRIADRETDYQKRRFDRALTPTRVDPFAAAQGAAADGQTYRAIMERRELEREEER
VRRAIEQKMKEAQEAGEEYKPLLKDGSADDSKDKEDASAAAETGRKRKKRWDVGAAETPE
QPAPAPAPAEPKKRSRWDQAPAVPAIAPGAEQPKKKSRWDQAPAATPAVPAGLATPMHPS
QASALPAAFGTDASARYMPLSDEELDAMLPGLEEGYKILEPPPGYAPVRAPARKLVTAPA
PATGFTMQDPSAARLAGQPMPKEIPGVGDLQFFKPEDMAYFGKLADGANEDELSVEELKE
RKIMRLLLKVKNGTPPMRKTALRQLTDNARNFGAGPLFNQILPLLMEKSLEDQERHLLVK
VIDRILYKLDDMVRPYVHKILVVIEPLLIDQDYYARVEGREIISNLAKAAGLATMISVMR
PDIDHVDEYVRNTTARAFAVVASALGIPALLPFLRAVCRSKKSWQARHTGVKIVQQIPIL
MGCAVLPHLKQLVDCIGPNLNDEQTKVRTVTSLAIAALAEASNPYGIESFDEILNPLWTG
ARKQRGKGLAGFLKAVGYIIPLMDEDYANYYTSQIMEILLREFSSPDEEMKKVVLKVISQ
CAATDGVTAGYLKEHVLDEFFKSFWVRRMALDKRNYRQVVETTVDIGQKVGVSEILERIV
NNLKDESEAYRKMTVETVEKLVASLGAADIGERLEERLVDGILHAFQEQTVEDIVMLNGF
GSVVNALGTRCKPYLPQIVSTILWRLNNKSPTVRQQAADLVSRIAMVMKQCGEDALMGKL
GIVLYEYLGEEYPEVLGSILGALRSIVTVVGISQMQPPIKDLLPRLTPILRNRHEKVQEN
TIDLVGRIADRGPESVNAREWMRICFELLDMLKAHKKGIRRAANNTFGFIAKAIGPQDVL
ATLLNNLRVQERQSRVNTAVAIGIVAETCAPFTVLPALMNEYRVPELNVQNGVLKSLSFL
FEYIGEMAKDYVYAVTPLLEDALIDRDQVHRQTAASVVKHIALGVVGLGCEDAMVHLLNL
LYPNLFETSPHVIDRIIEAIEAIRVAVGPGVVMNYVWAGLFHPARKVRTPYWRLYNDAYV
CSADAMVPYYPNLAEEGGIDRGELAVVL
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgccgagtttgagcagatccggaagctccaggccgagcgcaacgccgccgcc
gccgcaaagaagggctcgcggacctttgatcccgccaaccagcgccccgatgcctccacc
aaggccaggctcaccgaggcctgggacaccgacctgtacgaccgcgacaacggcgacaag
tttgccggctaccatcgcgagctgccgggcgccgacgccgacgacgacgacatgcccgac
gccgacgccgacgccgccgccggcacgcgccgcctcgtcggccagtacacggccacccgg
gcccagatcgacgagttcgcccgcggcgccggcgtcgaggaggacgaccccctggccgga
cgcggcgagcgcagcaaccgcatcgccgaccgcgagaccgactaccagaagcgccgcttc
gaccgtgccctgacccccacccgcgtcgaccccttcgccgccgcccagggtgccgccgcc
gacggacagacatatcgcgccatcatggagcgccgcgagctggagcgcgaggaggagcgc
gtccgccgcgccatcgagcagaagatgaaggaggcccaggaggccggcgaggagtacaag
cccctgctcaaggacggctccgccgacgacagcaaggacaaggaggatgcctccgccgcc
gccgaaacgggccggaagcgcaaaaagaggtgggatgtgggcgccgccgagacccccgag
cagcccgccccggcgccggcgccggccgagcccaagaagcggtcgaggtgggaccaagcg
cccgccgtccccgccatcgcgcccggggccgagcagcccaagaagaagtcgaggtgggac
caggccccggccgccacgcccgccgtccccgccggcctcgccaccccgatgcatccgtct
caggcgtccgcgctgcccgccgccttcggcaccgacgcgtcggcccggtacatgccgctc
agcgacgaggagctcgacgccatgctcccgggcctcgaggagggctacaagatcctcgag
cctccgccgggctacgccccggtccgggcgccggcgcgcaagctcgtcacggcgccggcg
ccggccacgggcttcaccatgcaggacccgtccgcggcgcgcctcgccggccagcccatg
cccaaggagatcccgggggtcggcgacctgcagttcttcaagcccgaggacatggcctac
tttggcaagctggccgacggcgccaacgaggacgagctcagcgtcgaggagctcaaggag
cgcaagatcatgcggctgctgctcaaggtcaagaacggcaccccgccgatgcgcaagacg
gccctgcgccagctgaccgacaacgcccgcaactttggcgccggccccctcttcaaccag
atcctgccgctgctcatggagaagtcgctcgaggaccaggagcgccacctgctcgtcaag
gtcatcgaccgcatcctctacaagctcgacgacatggtgcggccgtacgtgcacaagatc
ctggtggtcatcgagccgctgctcattgaccaggactactacgcccgcgtcgagggccgc
gagatcatctcgaacctcgccaaggccgccggcctggccaccatgatcagcgtgatgcgg
cccgacatcgaccacgtcgacgagtacgtgcgcaacacgacggcccgcgccttcgccgtg
gtcgcctccgccctcggcatccccgccctcctgcccttcctccgggccgtctgccgcagc
aaaaagtcgtggcaggcccgccacacgggcgtcaagatcgtgcagcagatccccatcctc
atgggctgcgccgtcctgccccacctcaagcagctcgtcgactgcatcgggcccaacctc
aacgacgagcagaccaaggtgcgcaccgtcaccagcctggccatcgccgccctggccgag
gcgtccaacccctacggcatcgagagcttcgacgagatcctcaacccgctgtggacgggc
gcccgcaagcagcgcggcaagggcctcgccggcttcctcaaggccgtcggctacatcatc
ccgctcatggacgaggactacgccaactactacacgagccagatcatggagatcctgctg
cgcgagttctcgtcgcccgacgaggagatgaagaaggtggtgctcaaggtcatctcgcag
tgcgccgccaccgacggcgtcacggcggggtacctcaaggagcacgtgctcgacgagttc
ttcaagagcttttgggtgcgccgcatggccctcgacaagcgcaactaccgccaggtcgtc
gagaccaccgtcgacatcggccagaaggtgggcgtcagcgagatcctcgagcgcatcgtc
aacaacctcaaggacgagagcgaggcgtaccgcaagatgacggtcgagacggtcgagaag
ctcgtcgcctcgctcggcgccgccgacattggcgagcgcctcgaggagcgcctcgtcgac
ggcatcctgcacgccttccaggagcagacggtcgaggacattgtcatgctcaacggcttc
ggctccgtcgtcaacgccctcggcacccgctgcaagccgtacctgccccagatcgtcagc
accatcctgtggcgcctcaacaacaagtcccccacggtgcgccagcaggccgccgacctg
gtctcgcgcatcgccatggtcatgaagcagtgcggcgaggacgccctcatgggcaagctc
ggcatcgtcctctacgagtacctcggcgaggagtaccccgaggtcctcggctccatcctc
ggcgccctgcgctccatcgtcaccgtggtcggcatcagccagatgcagccccccatcaag
gacctgctgccgcgcctgacgcccatcctgcgcaaccgccacgaaaaggtgcaggagaac
accatcgacctggtgggccgcatcgccgaccgcggccccgagagcgtcaacgcgcgcgag
tggatgcgcatctgcttcgagctcctcgacatgctcaaggcccacaagaagggcatccgc
cgcgccgccaacaacacgtttggcttcatcgccaaggccatcggcccccaggacgtgctg
gccaccctgctcaacaacctgcgcgtccaggagcgccagtcgcgcgtcaacacggccgtg
gccatcggcatcgtggccgagacgtgcgcccccttcacggtcctgcccgccctcatgaac
gagtaccgcgtgcccgagctcaacgtgcaaaacggcgtgctcaagtcgctgtccttcctc
tttgagtacattggtgagatggccaaggactacgtctacgccgtcacgccgctgctcgag
gacgccctcatcgaccgcgaccaggtccaccgccagacggccgcctcggtcgtcaagcac
atcgccctcggcgtcgtcgggctgggctgcgaggacgccatggtccacctgctcaacctg
ctctacccgaacctgttcgagacgagccctcacgtcatcgaccgcatcatcgaggccatc
gaggccatccgcgtcgccgtcgggccgggcgtcgtcatgaactacgtctgggcgggcctg
ttccacccggcccgcaaggtgcgcacgccttactggaggctctacaacgacgcctacgtg
tgcagcgccgacgccatggtgccgtattaccccaacctggccgaggaaggggggatcgat
cggggagagctggcggtggtgttgtaa
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integrated database retrieval system
