Remersonia thermophila: 98127606
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Entry
98127606 CDS
T10833
Symbol
VTJ83DRAFT_627
Name
(RefSeq) hypothetical protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rthe Remersonia thermophila
Pathway
rthe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
98127606 (VTJ83DRAFT_627)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rthe03041
]
98127606 (VTJ83DRAFT_627)
Spliceosome [BR:
rthe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
98127606 (VTJ83DRAFT_627)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Gbeta
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
PRP4
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
NBCH_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_IFT140_1st
WDR54
Beta-prop_EIPR1
Beta-prop_RIG_1st
Beta-prop_IFT122_1st
Tricorn_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_Vps41
Nbas_N
WD40_RFWD3
Nucleoporin_N
RMC1_N
Latrophilin
Spt5_N
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
98127606
NCBI-ProteinID:
XP_070869980
JGI:
Remth1_627
LinkDB
All DBs
Position
1:complement(join(2243018..2244552,2244607..2244637,2244714..2244761))
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AA seq
537 aa
AA seq
DB search
MMHPSRRAYVEDAETEDRGGIDIHSIPLDHDYDIPGAGAGMAPEKASALLSQFERKRLAA
TIAVPTDDGRVRAKLRELGEPITLFGEGPADRRDRLRELLAAQAHGQQAGGGGGGGGGES
ADVEMQDAQEEEEEEAEEQEEEFYSKGSEELLQARMQIAQYSIPRAKRRIEFQKKEATIP
LRTHAKLRKEIRERLQTFELQGSQTAGDRHVSMVRISPNGKLIATGNWGGQVKLIDVPSL
EHKRTFRGHTNKISGISWMPGATLAESNVSESAVNLASGGAEGQVNLWSLTQDTPLATLS
GHSQRVCRVEFHPSGRYLASASEDTSWRLWDVETATELLLQEGHSRGVYAVSFNTDGSLL
ASAGLDSIGRVWDLRSGRTVMILDGGTDGHIKPIYGLDWGSDGHRVLTASADGWIKCWDV
RKVQRTGAIGAHTSAVADVRWFKGLDDPLDGTPPGVDDKGMQLPKRSATFVVSAGFDHKV
NVFSADDWGLIQSLSGHTGPVASADISRDGRWIVSGGHDRTIKLWGRNDSAGMYGHD
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgatgcacccatcgcgaagagcctatgtagaagacgccgagacagaagatcgaggcggc
attgacattcactccatccccctcgaccacgactatgacatccccggtgccggcgccggc
atggcgcccgagaaggcctcggcccttctctcgcagttcgaacgcaagaggctagccgcg
accattgccgtgcctaccgatgacggacgagtccgagcgaagctccgagagcttggcgag
cccattaccctcttcggagagggcccggccgaccggcgcgacaggcttcgagagctcctc
gccgcgcaagcccacgggcaacaggccggcggcggcggcggcggcggcggcggcgagagc
gcagacgtggagatgcaggatgcccaggaggaggaagaggaggaggccgaggagcaggaa
gaggagttttattccaaggggtccgaggagctcctccaggctcggatgcaaatcgcccaa
tattcgatcccgcgggccaagcggcgcatcgagttccaaaagaaggaggccaccatcccc
ctgcgcacccacgccaagctccgcaaggagatcagggagcggctgcagacgtttgagctt
cagggcagccagacagccggcgaccgccacgtcagcatggtgaggatatcgcccaacggg
aagctgatcgccacgggcaactggggcggccaggtcaagctcatcgacgtgccgtcgctg
gagcacaagcgcacgttcaggggccacaccaacaagatcagcggcatctcgtggatgccc
ggcgccacgctggccgagtccaacgtctccgagagcgccgtcaacctggcttctggcggc
gccgaggggcaggtcaacctgtggtcgctgacgcaggacaccccgctggccacgctttcg
ggccactctcagcgggtctgccgcgtcgagttccacccttcgggcaggtacctggcgtcg
gcgtccgaggacacgtcgtggcggctgtgggacgtggagacggccacggagctgctcctg
caagagggccactcgcggggcgtctacgccgtgagcttcaacacggacgggtcgctcctg
gccagcgcgggcctggacagcatcgggcgggtctgggacctgcgctccggccgcaccgtc
atgattctcgacggcggcaccgacggccacatcaagcccatctacgggctcgactggggc
tcggacggccaccgcgtgctgacggcctcggccgacggctggatcaagtgctgggacgtg
aggaaggtgcagcgcacgggcgccattggcgcgcacacgagcgccgtcgcggatgtgagg
tggttcaaggggctggatgatcccctcgacggcacgccgccgggcgtggacgacaagggc
atgcagctgcccaagaggtcggccacctttgtggtgtctgcgggcttcgaccacaaggtc
aacgtcttctcggccgacgactggggcctcatccaatcgctctcgggccacacgggcccc
gtggcgagcgcggatatcagcagggacgggaggtggatcgtgagcggcggccacgatcgg
accatcaagctgtggggaagaaacgactcggcgggcatgtacggtcatgactag
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