Remersonia thermophila: 98127992
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Entry
98127992 CDS
T10833
Symbol
VTJ83DRAFT_6617
Name
(RefSeq) hypothetical protein
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
rthe Remersonia thermophila
Pathway
rthe03022
Basal transcription factors
rthe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
98127992 (VTJ83DRAFT_6617)
09124 Replication and repair
03420 Nucleotide excision repair
98127992 (VTJ83DRAFT_6617)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rthe03021
]
98127992 (VTJ83DRAFT_6617)
03400 DNA repair and recombination proteins [BR:
rthe03400
]
98127992 (VTJ83DRAFT_6617)
Transcription machinery [BR:
rthe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
98127992 (VTJ83DRAFT_6617)
DNA repair and recombination proteins [BR:
rthe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
98127992 (VTJ83DRAFT_6617)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
98127992
NCBI-ProteinID:
XP_070864244
JGI:
Remth1_6617
LinkDB
All DBs
Position
6:complement(1563121..1564428)
Genome browser
AA seq
435 aa
AA seq
DB search
MSVQDAVDASEHYEVYNTDDIPSLCTIIIDTNPRAWAALGDVLPISKAIANILVFVNAHL
AFSNSNQVALLAAHTNRAVWLYPSPPTPAQSNHDGANGRADASSKLAHTSANKFPQFARI
ENSLLTSIRALMDSTTDSDISSTTTQIAGALTLALAHINKTALSFAAPTAAATAGAAGTS
GVATGTSGPAPVVTATTSAGGLAGLHARILILSVSDSAPAQYIPTMNAVFAAAHARIAID
TLSLRGRATFLEQASFITNGTFIRAQEPRGLLQYLMLGFGSGSAPRNPAAAAASDATSGP
SAAGKPKTITAGGKSHHHHHHHKTGRLPPGASVAELLVTPSADAVDFRAACFCHRSVVDT
GFVCSVCLSIFCEVPDGAECLTCGTKLALGNYGKKPVVAPWPKHAAAGGGGGSAAGEAGV
SQDHAKKEKRKTGPN
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttcaagatgccgtcgacgcgtccgagcactatgaggtgtacaacacggatgac
attccgtccctctgtaccatcattatcgacacgaacccgcgggcatgggccgcccttggc
gacgtgctgcccatatccaaggcgatagccaacatactcgtctttgtcaacgcccatcta
gccttcagcaactcgaaccaggtcgctctgctggcagcccacacgaaccgggccgtctgg
ctgtatccctctccgccgacaccggcacagtcaaaccatgacggcgccaacggccgagca
gatgcctcgtcaaagctcgctcacacatcagccaacaaattcccccagttcgcccggata
gaaaactccctcttgacctccattcgtgccctcatggacagcaccaccgactccgacatt
tcatcaacaaccacccaaatcgccggcgccctcaccctcgccctggcgcacatcaacaaa
accgccctctccttcgccgccccaaccgccgccgccaccgccggcgcagcaggcacctcg
ggcgtcgcaaccgggacctccggccccgctccggtagtaacggccaccacctccgcaggt
ggcctcgccggcctacacgcgcgcatcctgatcctctcggtcagcgacagcgccccggcg
caatacatcccgaccatgaacgccgtctttgcggccgcccacgcgcgcatcgccatcgac
acgctctcgctgcgggggcgtgcgacgttcctcgaacaggcgagctttatcaccaacggc
accttcatccgagcccaagagccgagggggctgctgcagtacctcatgcttggtttcggc
tccggctcggccccgcgcaacccggccgccgcggctgcttcggacgcgacgtctgggcca
tcggccgctgggaagccaaagaccatcaccgcggggggcaaatcgcatcaccaccaccat
caccacaagacggggagactgccccccggcgcgagcgtggcagagcttctcgtcaccccc
tcggccgacgccgtcgacttccgcgcggcatgcttttgccaccgctccgtcgtcgacacg
ggctttgtgtgttccgtctgcttgagcatcttctgcgaggtacccgacggtgccgagtgc
ctgacgtgcgggacaaaactggccctgggtaattacgggaagaagcctgtcgtggcgccc
tggccgaagcatgctgctgcgggtggcggtgggggttctgctgcaggcgaggctggagta
tcgcaggaccacgcaaagaaagagaagaggaagacgggaccgaactaa
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