Remersonia thermophila: 98128018
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Entry
98128018 CDS
T10833
Symbol
VTJ83DRAFT_6640
Name
(RefSeq) hypothetical protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
rthe Remersonia thermophila
Pathway
rthe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
98128018 (VTJ83DRAFT_6640)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98128018 (VTJ83DRAFT_6640)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
98128018 (VTJ83DRAFT_6640)
mRNA degradation factors
5'-3' decay
Lsm complex
98128018 (VTJ83DRAFT_6640)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF5046
Hfq
Motif
Other DBs
NCBI-GeneID:
98128018
NCBI-ProteinID:
XP_070864267
JGI:
Remth1_6640
LinkDB
All DBs
Position
6:join(1647486..1647660,1647730..1647798,1647917..1648233)
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AA seq
186 aa
AA seq
DB search
MMENLSINDPAPPPPMPPHAPAGPGGIPPALGRPPPPQQQQLPAQMFTTAAQLLDLTDKK
LMVALRDGRKLVGILRSWDQFANLVLQSTKERLFVPPGTAPNQPRGLYADIDRGLFVVRG
ENVLLLGEMDLDKEDDPPAGYDLADVAVVKKLAEQRKAQDKVREKKKVKLLAKEGFDSEN
LGEVLL
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaatctcagcatcaacgaccctgctcctccccctcccatgccgccccatgcc
cccgccggcccgggagggatcccaccggccctcggccggcctccgccgccccagcaacag
cagctgcccgctcagatgttcacgacggcggcccagctgctagacctcaccgataaaaaa
ctcatggttgcgctacgcgacggccgcaagctcgtaggaatcctgcgcagctgggatcag
tttgcgaacctggtcctccaatccaccaaagagcgcctcttcgtgccgccggggaccgcg
cccaaccagccgcgcgggctctacgccgacatcgaccgcggcctgttcgtggtgcgcggc
gagaacgtcctgttgctgggcgagatggatctcgacaaggaggatgacccgcccgcggga
tacgacctggccgatgtcgccgtggtcaagaagctcgccgagcagcgcaaggcgcaggat
aaggtgagggagaagaaaaaggtcaagctgcttgccaaggaagggtttgatagcgagaat
ttgggtgaggtcttgttgtaa
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