Remersonia thermophila: 98128081
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Entry
98128081 CDS
T10833
Symbol
VTJ83DRAFT_6698
Name
(RefSeq) hypothetical protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
rthe Remersonia thermophila
Pathway
rthe03022
Basal transcription factors
rthe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
98128081 (VTJ83DRAFT_6698)
09124 Replication and repair
03420 Nucleotide excision repair
98128081 (VTJ83DRAFT_6698)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rthe03021
]
98128081 (VTJ83DRAFT_6698)
03036 Chromosome and associated proteins [BR:
rthe03036
]
98128081 (VTJ83DRAFT_6698)
03400 DNA repair and recombination proteins [BR:
rthe03400
]
98128081 (VTJ83DRAFT_6698)
Enzymes [BR:
rthe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
98128081 (VTJ83DRAFT_6698)
Transcription machinery [BR:
rthe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
98128081 (VTJ83DRAFT_6698)
Chromosome and associated proteins [BR:
rthe03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
98128081 (VTJ83DRAFT_6698)
DNA repair and recombination proteins [BR:
rthe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
98128081 (VTJ83DRAFT_6698)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SNF2-rel_dom
AAA_11
Motif
Other DBs
NCBI-GeneID:
98128081
NCBI-ProteinID:
XP_070864325
JGI:
Remth1_6698
LinkDB
All DBs
Position
6:complement(join(1859193..1860572,1860640..1860737,1860796..1861126,1861187..1861303,1861359..1861612,1861674..1861805,1861862..1861881,1861952..1861961,1862023..1862063,1862137..1862153))
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AA seq
799 aa
AA seq
DB search
MEFNIDDLPVLFPYPRIYPEQYAYMVDLKRTLDAGGNAVLEMPSGTGKTVTLLSLIVAYQ
QHYPSHRKLVYCSRTMSEIEKALVELKALMKFRAERLGREEDFRALGLTSRKNLCLHPSV
RREKSGNIVDARCRSLTAGFVKEKKEKGEDVEVCVYHDNLDLLEPHNLIPNGVWTLDGLL
RYGEQHKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKDLPKDCIVVFDEAHNIDN
VCIESLSTDITEDSLRRASRGAQFLDNKINEMRESDQKKLQDEYEKLVQGLRGAEDSQPE
DAFMANPILPADLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLAHL
KEYTFIEKKPLRFCAERLTSLVRTLELTNIEDFQPLQEVATFATLVATYEKGFLLILEPY
ESDTAEVPNPVLHFTCLDAAIAIKPVFERFDSVIITSGTLSPLEMYPKMLDFPTVVQESY
NMTLARRSFLPLIVTRGSDQSPISTGFQVRNEPGVVRNYGNLLTEFAKITPDGLVVFFPS
YLYMESIISMWQGMGILDEVWKYKLILVETPDAQETSLALETYRTACCNGRGAVLLCVAR
GKVSEGIDFDHQYGRAVLCIGVPFQYTESRILKARLEFLRETYRIRENDFLSFDAMRHAA
QCLGRVLRGKDDYGLMVLADRRFQKKRAQLPKWIAQAILDADVNLSTDMAVSSARRFLRT
MAQPFRAKDQEGISTWSIEDLRKHQEKMDEERIRELQAEQERAENGEANAGAAAGGWDGK
ESDYEMDEDAEAELMALDN
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggagttcaacatcgacgaccttcccgtcctctttccgtatccccggatctatccagag
caatatgcctacatggtggatctgaagaggacgctcgatgcgggtggaaacgccgtgctg
gaaatgccctcgggcacgggcaagacggtgacgctgctgtcgctgattgtggcctaccag
cagcactatccgtcgcaccgcaagcttgtctactgttctcggacaatgtccgagatcgaa
aaggcgctggtggagctgaaagccttgatgaagtttcgtgccgaacgcctcgggcgagag
gaggacttccgggcgctcgggctcacaagtcgcaagaacctgtgccttcatccgtcggtg
agacgggagaagagcggcaacatcgtcgatgcgcgttgccgcagcctgacggcgggcttc
gtcaaggagaagaaggaaaaaggggaggacgttgaggtttgcgtctaccatgacaatctt
gaccttctcgaaccccacaacctgatccccaacggcgtgtggacgctggacggcctcttg
cggtacggcgagcaacacaagcagtgcccgtacttcacggccaggaggatgatgcaatac
tgcaacgtcatcatctactcgtaccactatctgctggatcccaagatcgccgagcgcgtc
tccaaggacctcccaaaggactgcatcgtcgtgtttgacgaggcccacaacatcgacaac
gtgtgcatcgagtctctcagcaccgacatcaccgaggactcgctgcggcgggccagccgg
ggcgcccagttcctcgataacaagatcaacgagatgagagagtcggaccagaagaagctc
caggatgagtacgagaagcttgtgcaaggactccgaggcgccgaagacagccagccagag
gacgcctttatggccaacccaatcctccctgcggacctgctcaaggaggccgttcccggc
aacatccggagggccgagcactttgtggcgttcctcaggaggtttatcgagtatctcaag
acgcggatgaaggtgcggcaggtcatctccgagacgccgccgtcgttcctcgcgcacctc
aaggagtacacgttcatcgagaagaagcccctgcggttctgcgcggagcggctgacctcg
ctggtgcggaccctcgagctcaccaacatcgaggacttccagccgctgcaggaggtggcc
acgttcgcgacgctggtggcgacctacgagaaggggttcctcctgatcctggagccgtac
gagtcggacacggccgaggtgccgaaccccgtgctgcacttcacgtgcctcgacgccgcc
atcgccatcaagcccgtctttgagcgcttcgactcggtcatcatcacgtcgggaacgctc
tcgccgctcgagatgtaccccaagatgctcgacttcccgaccgtcgtccaagagtcgtac
aacatgacgctcgcccgccggtccttcctgcccctcatcgtgacccggggcagcgaccag
tcgcccatctcgacgggcttccaggtccgcaacgagcccggcgtggtgcgcaactacggc
aacctcctgaccgagttcgccaagatcacgccggacgggctcgtcgtcttcttcccctcg
tacctctacatggagtccatcatcagcatgtggcagggcatgggcatcctggacgaggtg
tggaagtacaagctcatcctggtcgagacgcccgacgcgcaggagacgtcgctcgccctc
gagacgtaccgcacggcctgctgcaacggccgcggcgccgtgctcctctgcgtcgcgcgc
ggcaaggtctcggagggcatcgactttgaccaccagtacggccgcgccgtgctctgcatc
ggcgtgcccttccagtacaccgagtcgcgcatcctcaaggcccgcctcgagttcctgcgc
gagacgtaccgcatccgcgagaacgacttcctctcgttcgacgccatgcgccacgccgcc
cagtgcctcggccgcgtcctgcgcggcaaggacgactacgggctcatggtcctggccgac
cgccgctttcaaaagaagcgcgcccagctgcccaagtggatcgcgcaggccatcctcgac
gccgacgtcaacctgagcaccgacatggccgtgagcagcgcccgccggttcctgaggacc
atggcccagccgttccgcgccaaggaccaggagggcatcagcacctggagcatcgaggac
ctgcggaagcaccaggaaaagatggacgaggagcggatccgggagctgcaggccgagcag
gagagggccgagaacggggaggcgaacgccggcgccgcggcgggcgggtgggacgggaag
gagagcgattacgagatggacgaggatgccgaggcggagctgatggcgctggataactag
DBGET
integrated database retrieval system
