Remersonia thermophila: 98128893
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Entry
98128893 CDS
T10833
Symbol
VTJ83DRAFT_7428
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
rthe Remersonia thermophila
Pathway
rthe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
98128893 (VTJ83DRAFT_7428)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98128893 (VTJ83DRAFT_7428)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
98128893 (VTJ83DRAFT_7428)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
98128893 (VTJ83DRAFT_7428)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
EAD9
Cep57_MT_bd
DUF7310
WKF
DUF1192
Transcrip_reg
LPP
Med10
Motif
Other DBs
NCBI-GeneID:
98128893
NCBI-ProteinID:
XP_070863645
JGI:
Remth1_7428
LinkDB
All DBs
Position
7:join(1714414..1714668,1714730..1715777,1715844..1716357,1716435..1716495)
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AA seq
625 aa
AA seq
DB search
MAARKLQQEVDKCFKKVAEGVAEFEAIYEKIEQSTNQAQKEKLEDQLKREIKKLQRLRDQ
IKTWAASNDIKDKAPLLEQRRLIETQMEKFKAVEKAMKTKAYSKEGLSAAAKLDPKEQAK
IDASDFLSSMVDELEQQIETLEAESESIQATMKKGKGHAAKAERISEIERIIERHKWHQG
KLELIRRSLENGGVEAEQVNELGENIKYYVSDGMNEDFMEDETMYDDLNLDDEEDQYGMN
LDNDRVSSQDTQSIQDDPSAEPESKPSAPSGKQRSAADSAAGSAARRPAAQVKSPLPTLA
TVHSTPLPTLSNGALANVAMKPAAPPARLAGEGLKYASAAAAGANNVGIAPLPPPPGAPA
RTSAANSPSVASAQPASQEKASSASAAPTSTPSAQAQQGKSTGKGKGHQQAAAAAAAAAA
AAATASNDAAESSKAAQANGASNGIKPIAEAEEEEESIYHLPASLRDLVESFEAIKQRPA
PINAPATQRMQATAEASKPGILDAEPPRNYQPDIRFHSHTRFPQEPLAIFDDPRLYARID
PDTLFYVFYYKQGTYQQYLAARALKDQSWRFHKQYQTWFQRHEEPKSITEEFEQGTYRFF
DYESTWMNRRKADFKFAYKYLEDEV
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgaaaactccaacaggaagtcgacaagtgcttcaagaaggtggccgagggc
gttgccgaattcgaggccatctacgagaagatcgagcagtcgacaaaccaggcgcagaag
gagaagttggaagaccagctcaagcgcgagatcaagaagctccagaggcttcgcgaccag
atcaagacatgggctgccagcaacgacatcaaggacaaggctccgctcttggagcaacgg
cgtctgattgagacgcaaatggaaaagttcaaggctgtcgaaaaggccatgaagaccaag
gcgtactcgaaagaagggttatctgcggctgctaagcttgaccccaaggagcaggccaag
attgacgccagcgacttcttgagcagcatggtcgacgagctggaacagcagatcgaaacc
ctcgaggccgagagcgaatcgatacaggccaccatgaagaaggggaagggccatgccgcc
aaggccgagaggatatctgagatcgagcgcatcattgagcgccacaagtggcaccagggg
aaattggagctcatccggcgctccctcgagaacggaggcgtcgaggccgagcaggtcaac
gagctgggcgagaacatcaagtactacgtctcggacggcatgaacgaagacttcatggag
gacgagaccatgtacgacgacttgaacctggatgacgaggaggaccagtatggcatgaac
ctggacaacgaccgcgtctcttcgcaggacacccagtcgatacaggacgacccatcggcc
gagcccgaatccaaaccaagcgcgccctccgggaaacagcgaagcgcggccgactcggcg
gccgggtcggcggcgcggcggccggcagctcaggtcaagtctccgcttccaacgctggcg
accgtacacagcactccgctgcccaccctgagcaatggcgctctggccaacgtggccatg
aagccagcagctccaccagcccgattggccggagaagggttgaagtatgctagcgcagcc
gcggcaggggcgaacaatgtcggtatcgccccgttaccacctccgccaggtgcgcccgcg
aggacaagcgctgccaactcgcccagcgtcgcatcggcgcagccggcatctcaagagaag
gcgtcgagcgcaagcgctgcgcccacaagcacgccatccgctcaagcccagcagggcaag
tctacagggaaaggaaaggggcatcagcaggcggcagcagcagcagcagcggcggcggcg
gcggcggcgacggcatccaacgatgcggccgaatcctccaaagctgcgcaagccaatggt
gccagcaacggcatcaagccgatcgccgaggcggaagaagaggaagaatccatttaccac
ctccccgcatcgctgcgcgatcttgtggagtccttcgaggccatcaagcagcggcctgct
cccatcaacgcgccggcaacacaacgcatgcaggcaacggccgaggccagcaagccgggc
atcctcgatgctgagccaccacggaactaccaaccggacatccgcttccactctcacacg
cgcttcccacaggagccgcttgccatcttcgacgacccgcgcctgtacgcgcgcatcgac
ccggacacgctcttctacgtcttctactacaagcagggcacctaccagcagtacctggcg
gcgcgcgcgctcaaggaccagagctggcgcttccacaagcagtaccagacgtggtttcaa
cgacacgaggagccaaagtcgatcacggaggagtttgagcagggcacctaccggtttttt
gactacgagagcacatggatgaataggcgcaaggccgatttcaagtttgcgtacaagtac
cttgaggatgaggtctga
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