Rufibacter tibetensis: DC20_01625
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Entry
DC20_01625 CDS
T04099
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rti
Rufibacter tibetensis
Pathway
rti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DC20_01625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rti03019
]
DC20_01625
Enzymes [BR:
rti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DC20_01625
Messenger RNA biogenesis [BR:
rti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DC20_01625
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
SNF2-rel_dom
AAA_19
UvrD-helicase
Flavi_DEAD
Cas3-like_C_2
DUF934
RhlB
Motif
Other DBs
NCBI-ProteinID:
ALI97910
UniProt:
A0A0P0CFX4
LinkDB
All DBs
Position
442365..443807
Genome browser
AA seq
480 aa
AA seq
DB search
MGYKQATPVQAQAIPFILESKDLIACAQTGTGKTAAFLVPTLSKITEAKYDFTSTLILVP
TRELAKQIDDQVEGLSYFTGATSIAIYGGNNAQNWDQQKKALTSGADIIIATPGRLIAHM
QMGYVKLDQVKYLILDEADKMLDMGFMDDLNKIISQLPKERQTLMFSATMPPKIRTFAKQ
ILQEPEEISLSISKPAANIDQRIYLVYDNQKLRVLQHILKHAEIQTMILFTSRKNAVNDI
VRSLQKMGFDAEGISSDRTQDEREATLQRFRNKQLQVLVATDVMSRGIDVEGISHVVNFD
VPQDAEDYVHRIGRTARAATSGVAITFVNEQDQERLVKIEKLIERELPKLPLPEGVGEGP
TFDPVGNSKRGGNRGRGGAPAGRGGRSEGGRPEGRRREVLGSGSRDNNRRRDAKPRSEKP
AGEITEGSAPRPPRTEGQPQAPRVEGEEVKRKKKRRKKPAAPKAAEGGQTTTATPTSSAE
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgggttataagcaagctacccctgttcaggcacaagcaatcccttttatattagagtca
aaagatttgattgcctgcgcccagacgggcacaggtaaaacagctgcttttctagtacct
accttaagcaaaatcacagaggctaaatacgacttcaccagtaccttgatcttggtaccc
acccgtgaattagccaaacagattgatgaccaggtggaaggacttagctactttacgggc
gctacctctattgccatctacggcggtaacaatgcccagaactgggaccaacagaagaaa
gcgttgaccagcggagcagacattattatagccactccaggccgtcttattgctcacatg
caaatggggtacgtgaaactagaccaggtgaagtaccttatcttagatgaggccgataaa
atgctggacatgggttttatggatgatcttaacaagattatctctcaattgcctaaagaa
cgccagacgcttatgttttcggccaccatgccgcctaagatcagaaccttcgcaaagcag
attttacaggagcctgaagagataagcctttccatctccaagccggcggctaacatagac
cagcgtatttacctggtgtatgacaaccaaaagctgagagttttgcagcacattttaaaa
cacgctgagattcagaccatgattttgttcacctcgcgcaaaaatgcggtgaatgacatt
gtgcggtctctgcagaaaatgggctttgacgctgaaggcatcagctctgaccgcacacag
gatgagcgggaagccaccttacagcgcttcagaaacaagcaattgcaggtgttggtagca
acagacgtaatgtccagaggaattgacgtggagggaatcagccacgttgtaaactttgac
gtgccccaggatgcagaagactatgtgcaccgcattggccgtacagccagggcggcaacc
tcaggtgtggccatcacttttgtgaatgagcaagaccaggaaagactggtaaagattgaa
aagctgatcgaacgtgagcttcctaaactgcccttacctgaaggcgtaggcgaaggcccg
acctttgacccggtaggcaacagcaaaagaggtggcaacagaggccggggaggtgctccc
gcaggccgtggcggacgctcagaaggtggtcgcccagaaggaaggagaagagaagtatta
ggcagtggtagccgcgacaacaaccgcagaagagacgcaaaaccccgcagcgaaaaacca
gccggagaaattacggaaggctctgcgccacgcccacccagaacggagggacaacctcag
gcaccaagagttgaaggagaggaagtaaagcgtaagaaaaagcgtcgtaaaaaacctgct
gctcccaaagcggcggaaggcggacaaaccacaaccgctactcctacgtcatcagcagaa
tag
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