Rufibacter tibetensis: DC20_05440
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Entry
DC20_05440 CDS
T04099
Name
(GenBank) hypothetical protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rti
Rufibacter tibetensis
Pathway
rti03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DC20_05440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rti03400
]
DC20_05440
Enzymes [BR:
rti01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DC20_05440
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DC20_05440
DNA repair and recombination proteins [BR:
rti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DC20_05440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
ALI98518
UniProt:
A0A0P0CN69
LinkDB
All DBs
Position
complement(1418136..1418945)
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AA seq
269 aa
AA seq
DB search
MPELPEVETYRRFIDETSLYQTITEVEVQDPKRQLQVDLDDFRKVLRGNQFTGTQRIGKQ
LFLLTAQGPIVTMHFGMTGDVGYYRDAADTPRFARAIFHFETGFKFAFIDSRKFGRLGLT
QSVDTFRQQKKLGPDALTLSTEELTQGLARKKSAIKPLLLDQRIAPGVGNWIADEVLFQA
QLEPERPAHTLQPTEIDRLATSIREVLEIAAEAIYRDFPSHYLIHAREWDEAPSSTITNA
HLNCPRCQMLIQKKYVGGRATYFCPNCQM
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaggtagaaacctaccgccgcttcatagacgaaaccagcttgtac
caaaccattactgaggtggaggtgcaggaccctaagcggcagttgcaggtagacctggat
gatttcaggaaggttttacggggaaatcaattcactggtacccaacgcataggcaagcag
ctgttcctgttaaccgctcaaggccctattgtgactatgcacttcgggatgacgggggac
gtaggctattaccgtgatgccgccgataccccacgttttgcccgggcaatcttccatttt
gagacaggcttcaagtttgcctttattgattcacgtaagtttggcagactggggctcacc
caaagcgtagacactttccggcagcaaaagaagctgggtcctgacgcgctcaccctctct
accgaggaacttacccagggtctcgccagaaagaaatctgccatcaagcccctgttgctg
gaccagcgcattgcacccggcgtaggcaactggattgctgatgaagtgttgttccaggct
caactggagcctgagcggcccgcccatactttgcagcctactgagattgaccggctggcc
acctccatcagagaggtactggaaatcgctgccgaggccatctaccgtgacttcccctcg
cattacctcatccacgcccgcgaatgggatgaggctccctcgtcaaccatcaccaatgcc
catttgaattgcccccgctgccagatgctcatccagaagaaatacgtgggtggccgcgct
acctatttctgcccgaactgccaaatgtga
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