Rufibacter tibetensis: DC20_07365
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Entry
DC20_07365 CDS
T04099
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rti
Rufibacter tibetensis
Pathway
rti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DC20_07365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rti03019
]
DC20_07365
Enzymes [BR:
rti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DC20_07365
Messenger RNA biogenesis [BR:
rti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DC20_07365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
HEM4
Fe-ADH
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ALI98826
UniProt:
A0A0P0CB47
LinkDB
All DBs
Position
1877992..1879353
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AA seq
453 aa
AA seq
DB search
MTFSELNLIEPLLQALQEEGYTTPTPIQEQAIPPVLNGDDLLGCAQTGTGKTAAFSLPLL
QRLHEAGPAHPAKAIRALILTPTRELALQIGDSIKSYGRHTKIKYTVVFGGVGQVPQVEQ
IRRGVDIVVATPGRLLDLMNQGRLSLKHIETFILDEADRMLDMGFIHDVRKVIAQIPSNR
QTLLFSATMPQEIQKLSASILRDPVYVEVTPVSSTAEKIAQKVFFVEKTYKRALLKHLLQ
GDEIQRALVFSRTKHGADRIAKELSKAGISAQSIHGDKAQSTRVKALTQFKNNELKALVA
TDIAARGIDVDDLTHVINVDLPNEPETYVHRIGRTGRAGAEGIALSLCDDTELPYLRDIE
KLTKQIIPVEEEQPFHAEYSKLPLAGGKATDKLARKASGGAGSNGQNRGPRGGGGPGGRR
PDQRQGASQNSGRRPDQRQGSGNKPSGNRGGSR
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgacgttttcagaactaaatcttatagaacctctgctgcaggccctgcaggaagaggga
tataccactcccacccctattcaggaacaagccataccacccgtattgaacggcgacgac
ttactgggttgcgcccaaaccgggactggcaaaactgctgccttcagcttgccgctgctg
cagcgcctgcatgaggcaggtccggcccatccggcaaaagcaatcagagccctgatttta
acccctacccgcgagttggctttgcagattggcgacagcattaaatcatatggccgtcat
actaaaatcaaatacaccgtggtgtttgggggtgtaggccaggtaccacaggtagaacag
atcagacgcggcgttgacattgtggtggctactccgggccgtttactagacttaatgaac
cagggacggctgtccttgaaacacatagagacgttcatcttagatgaggcagaccgtatg
ctggacatggggttcattcatgacgtgcgcaaagtcattgcccagatcccttcaaaccgc
cagaccctgcttttctcggctaccatgccgcaggagatccagaagctttcggccagcatc
ctgcgtgacccagtgtatgtagaggtaacaccggtttccagcacggctgagaaaattgcg
cagaaagtattcttcgtggagaaaacctacaagcgcgcccttctgaagcacctgttacaa
ggagacgagattcaacgggcattggtgttctcccgtaccaaacacggggcagaccgtatt
gccaaagaactttccaaagcaggtatctcggcgcagtctattcacggagacaaggcccag
agcacccgcgtgaaagcgcttacgcagttcaaaaacaatgaactgaaggctctggtagct
actgatatcgcggcccgtggtattgacgtggatgacctcacgcacgtgatcaatgtagat
ttgccaaatgagcccgaaacctatgtgcaccgtattggccgtacaggccgggctggcgcc
gagggaattgcgctttctttatgcgatgacactgaactgccgtacctgcgtgacattgaa
aaactcaccaagcaaatcattccggtagaggaagaacagccgtttcatgccgagtactcc
aaactacctttagccggcgggaaagccactgataagttagcccgcaaagctagcggtggt
gccgggagcaacggccagaaccgtggcccaagaggcggtggtggaccaggcggacgccgt
ccagaccaacgccagggagccagccagaacagcggcagaagacccgaccagcgacaaggc
agtggaaacaaaccgtctggcaaccggggcggctccagatag
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