Rufibacter tibetensis: DC20_11580
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Entry
DC20_11580 CDS
T04099
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rti
Rufibacter tibetensis
Pathway
rti03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DC20_11580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rti03021
]
DC20_11580
03400 DNA repair and recombination proteins [BR:
rti03400
]
DC20_11580
Enzymes [BR:
rti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DC20_11580
Transcription machinery [BR:
rti03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DC20_11580
DNA repair and recombination proteins [BR:
rti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DC20_11580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ALI99491
UniProt:
A0A0P0C7T2
LinkDB
All DBs
Position
2864312..2868628
Genome browser
AA seq
1438 aa
AA seq
DB search
MALARNKKLIQDFSKVTISLASPESILERSNGEVTKPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVIQPGILGEDGVNMLDFLTEDEYLDMIDKLPRENQMLDN
HDPNKFIAKMGAEALQMLLERINLDDLSYDLRYSAAHETSQQRKAEALKRLRVVEAFRDA
ATRIENKPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVTTAFNADFDGDQM
AVHVPLGPAAILEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVTKGKRSTENEKIQ
GEGMSFYSAEEVIIAINEGQLSKHAYIKVRVKILDENNQLVTKLIETVAGRVLFNQFVPE
EVGYVDELLSKKKLQQIISRVFKVTGMARTAQFLDDIKTLGFQSAYKGGLSMGLGDIVIP
KEKDILVGQAKKDVDAVWANYSMGLITDNERYNQVIDIWTRINNQITETLMSRLEKDDQG
FNSIFMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNESDCGTLRGLEVSALKDNEDI
VESLSERILGRVNVHDIIDPITGELIHESGREITEEVARFIENTAIESVEIRSVLTCETK
RGICAKCYGRNLSTGRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVDAAIR
AKFAGVVEFEDVRTIETANAEGEPVKVVMGRSGEVKIVDPTTGKLLISNHVPYGSFLIVD
EGQTVAKGDELCNWDPYNAVILSEFDGTIAYESIVEGITFREESDEQTGHREKVIIETKD
KTKNPAIVINPVNGEPKTYNIPVGAHLTVEDGQKIKAGQIISKIPRAIGKTRDITGGLPR
VTELFEARNPSNPAVVSEIDGVVTYGGVKRGNREIYIESKDGVKKKYMVPLSKHILVQDN
DFVRAGVPLSDGAITPNDILNIQGPGAVQEYLVNEIQEVYRLQGVKINDKHIEVVVRQMM
QKVNVIDPGDTSFLENQTVDKVTFMEENDMIIDMKVVEDAGDSTAMKPGMIVTARRLRDE
NSSLKRRDLRIVTVRDAQPAVSRPTLQGITQASLGTQSFISAASFQETTKVLSEAAIKGK
ADELLGLKENVIVGHLIPAGTGLREYSKIIVGSKEEYESLTASRQSGVRTKQGELQEK
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atggcgttagcaagaaataaaaaattaatccaagacttctctaaagtgaccatctctttg
gcttctccagaatccattctggaaagatcaaacggggaggtaacgaaacctgaaactatc
aactacagaacttacaaaccagagatgggcggtttgttctgcgagcggattttcgggcca
gtgaaggattgggagtgccactgcggtaaatacaagagaatccgttacaaagggattatt
tgtgaccgttgcggggttgaagtaactgagaaaaaagtgcgtcgcgagcgcatgggccat
attgaactagttgtaccagtagcacacatctggtatttcaagtcattgccaaacaaaatt
ggttatctgttaggcttaccaaccaagaagcttgaccagatcatctattatgaacggtac
gtagtaatccagccaggtatcttgggtgaagacggcgtgaacatgctggacttcttaacc
gaagatgagtacctggacatgattgacaagctgccacgtgagaaccaaatgttggacaac
catgatccaaacaagttcatcgcgaagatgggagctgaagctcttcagatgttattggag
cgcattaacctagatgacctttcttatgatctgcgttattcagctgcccatgagacttct
cagcagcggaaagcagaagcgttgaagcgtctacgtgtagtagaggctttccgtgatgcc
gcaactcgtattgagaacaagcctgagtggatggtaatccgcatggtgcctgtaattcca
ccagaattgcgtccgttggttccgttggatggtggtcgtttcgctacgtctgacttgaac
gacttatatcgtcgcgttatcatccgtaacaaccgtctgaagcgtctgatcgagatcaaa
gcaccagaggtaatccttcgtaacgagaagcgtatgcttcaagaggcggttgactccctg
ttcgacaactcacgtaaagtgaacgctgttcgtgcagaaggtaaccgtgccctgaaatca
ctttctgacatgctgaaaggtaagcaaggacgtttccgtcagaacttgcttggtaagcgt
gtggattattcaggtcgttccgtaattgtggtaggtccagaactgaaactgcacgagtgc
ggtctgcctaagaacatggcagctgagcttttcaaaccattcatcatccgtaagcttatt
gagcgcgggatcgtgaagacggtaaagtctgcgaagaaaatcgtagacagaaaagacccg
gttgtatgggatattttggaaaacgtgctgaaaggacacccagtactattgaaccgtgct
cctacgctccacagattaggtattcaggccttccagccgaaactgattgaaggaaaagcg
attcagctgcacccattagtaaccacagcattcaacgccgactttgacggtgaccagatg
gcggtacacgttccactaggaccggcagctatcctggaagcctctatgttgatgttggct
tcgcataacatcctgaaccctgccaatggtgctccaattgcagtaccttctcaggacatg
gtgttgggcttatactacgtaaccaaaggcaagcgctctactgagaatgaaaaaattcaa
ggggaaggcatgtctttctactcagccgaagaagttatcatcgccatcaatgaaggccag
ctttctaagcatgcttacatcaaggtgcgggtaaaaatactggatgagaacaaccaatta
gtaacgaagcttattgagaccgttgctggtagagtattgttcaaccagttcgtgccagag
gaagtagggtatgtagacgaacttctgtctaaaaagaaattgcagcagattatctcccgc
gtgttcaaagtaaccggtatggcgagaactgctcagttcctggatgatataaaaactctt
gggttccagtctgcctacaaaggcggtctatccatgggcttgggtgacatcgtgatcccg
aaagagaaagacatcctggtaggccaagccaaaaaagatgtagatgctgtttgggctaac
tactctatgggtcttatcacagataacgagcgttacaaccaagtaattgatatctggacc
cgtatcaacaatcagattactgagacgttgatgtcccgtctggagaaagacgaccaaggc
ttcaactccatcttcatgatgatgcactcaggcgctcgtggttccagagagcagatccgt
cagttgggtggtatgcggggtctgatggcaaaaccgcagaagtctttacaaggctcagta
ggggagatcattgaaaacccaattctttccaacttcaaagaaggtctggatgtaattgag
tacttcatctctacccacggtgctcgtaaaggtcttgcggatacagccttgaaaacggcg
gatgcgggttacctaacccgtcgtttagtggacgtttcccaagatgtgattgtaaacgag
tctgactgcggtactttacgtggacttgaggtaagtgctctgaaagacaacgaggatatc
gtggagtctctgtctgagcgtatcctgggtcgtgtaaacgtgcatgacatcattgatccg
attaccggcgaattgatccatgagtcaggacgcgaaatcaccgaagaagtagcccgtttc
attgagaacacggctattgaaagcgtagagattcgttctgtattgacatgtgagaccaag
cgtggtatttgtgcgaaatgctacggccgtaacctttctactggccgcatggtgcagaaa
ggtgaggcagttggcgtaatcgcagcacaatctattggtgagccaggtacacagttgaca
cttcgtaccttccacgtgggtggtacagcgtctaacattgccgttgatgccgctatccgt
gctaagtttgccggagtggtggagtttgaagatgtgagaacaattgaaacagccaatgct
gaaggcgaacctgtgaaagtagtaatgggtcgttcaggtgaggtgaaaattgttgatcca
actacaggcaagctgttaatcagcaaccacgttccttacggttcattcctgattgtagat
gaaggacagactgtagccaaaggagacgagttgtgtaactgggatccctataatgcggtt
atcctttctgagtttgacggtaccattgcttacgaatctattgtggaaggtatcaccttc
cgtgaggagtcagatgagcagactggtcatcgtgagaaagtgatcatcgagacaaaagat
aaaaccaagaaccctgccattgtcattaaccccgtaaatggtgagcctaaaacttacaac
attccagtaggtgctcacttaactgtagaagatggacaaaaaatcaaagcaggtcagatc
atctctaagatcccacgtgctattggtaagacccgagatatcacgggtggtctgccacgt
gttacggagctgtttgaggcacgtaacccgtctaacccagcagtagtgagtgagattgac
ggtgtggttacttatggtggcgtgaaacgcggaaaccgtgagatctacattgagtctaag
gacggtgtgaagaagaagtacatggtacctctttccaagcacatcctggttcaggacaat
gactttgtacgtgccggtgttccgttgtcagatggtgctatcacgccaaacgatatcctg
aacatacaagggcctggtgctgtgcaggaatacttagtgaacgagattcaggaggtatac
cgcttgcagggtgtgaagatcaatgacaagcacattgaagtagtggttcgtcagatgatg
cagaaagtgaacgtgatcgatccaggtgataccagcttcctggagaaccaaacagttgat
aaagtaacgttcatggaagaaaacgacatgatcattgacatgaaagtagtggaagatgca
ggtgactcaactgccatgaaaccaggaatgattgtgacggcgcgtcgtctacgtgatgaa
aactcaagcttgaaacgtcgtgatttacgcattgtaacggttcgtgatgctcaaccagca
gtgtcaagaccaaccttgcaagggatcacacaagcttctttgggcacgcaaagctttatc
tcggcagcttccttccaggaaactaccaaagtattgagcgaagcagcaatcaaaggaaag
gcagacgaattactgggcttgaaagagaacgtaatcgtgggtcacttaatcccggcaggt
accggcttacgcgagtactcaaagataattgttggctcaaaagaggagtacgaatctctt
actgcgagcagacagtcaggcgtgagaacaaaacaaggcgaactgcaagagaaataa
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