Rufibacter tibetensis: DC20_17960
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Entry
DC20_17960 CDS
T04099
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
rti
Rufibacter tibetensis
Brite
KEGG Orthology (KO) [BR:
rti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rti03016
]
DC20_17960
Enzymes [BR:
rti01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
DC20_17960
Transfer RNA biogenesis [BR:
rti03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
DC20_17960
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ALJ00509
UniProt:
A0A0P0CA53
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All DBs
Position
4395707..4396255
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AA seq
182 aa
AA seq
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MKDTNRLFIAAKLPDEVITYLVQARQAYDDPAIRAVPEQNLHLTLYFLGNVPAIEDTFIR
QTLAQVAQRHSPFNLTLEQLEPGPKPRSPRLIWARFTLNETFSNLSQELTQALSSAPPKQ
EKFIPHVTLCRFKKEGVVPRDLPIISPPEDIVYPVSSIALWQSQLASPHPVYIVLEEYPL
FG
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacactaaccgtttatttatagcggccaagttgccagatgaagttatcacctat
ctggtacaggcccggcaggcgtatgatgatccagccattagggcagtgccggagcagaac
cttcacctgaccttgtactttctaggaaacgtacctgccattgaagatacttttatcagg
cagactctggcgcaggtggcacagcggcattccccattcaaccttaccttagaacaactg
gaacccggtccaaaacccagatcaccgcgtttgatttgggcccgttttaccctaaacgaa
acattttcaaacctcagccaggagttaacgcaagccctttcctcagcgccacccaaacag
gaaaagtttattccgcacgtgacgctctgccgatttaaaaaggagggagttgtaccacgc
gatttgcccatcatttctcctcctgaagatattgtctatccagtttcttccattgcgctc
tggcaatcacagttagcctcgccacaccctgtttatattgtgttggaagaatatccgctg
tttggatga
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