Rufibacter tibetensis: DC20_19905
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Entry
DC20_19905 CDS
T04099
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rti
Rufibacter tibetensis
Pathway
rti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DC20_19905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rti03019
]
DC20_19905
03009 Ribosome biogenesis [BR:
rti03009
]
DC20_19905
Enzymes [BR:
rti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DC20_19905
Messenger RNA biogenesis [BR:
rti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DC20_19905
Ribosome biogenesis [BR:
rti03009
]
Prokaryotic type
rRNA helicases
DC20_19905
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ALJ00838
UniProt:
A0A0P0CFY9
LinkDB
All DBs
Position
complement(4809680..4811599)
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AA seq
639 aa
AA seq
DB search
MERIKFQELPLSEEIQRAIVDLGYEEASPIQTAAIPVLLEGRDVIGQAQTGTGKTAAFAI
PTIEGIDPNNREVQALILCPTRELAIQVSEEIQKLVKYKKGISVVPIYGGQPYERQLRAL
KQGVQIVIGTPGRVMDHIERGTLRLETTKTIILDEADEMLDMGFREDIEFVLTKMPEDRQ
TVFFSATMSKPIMELTRKYQTNPEIVKVTQQQLTVNNIEQIYFEVRSGGKMEVTTRLIDM
YNFKVVIIFCNTKRMVDELVSNLQARGYFADGLHGDLNQNQRTNVMNKFKAGTLEILVAT
DVAARGIDVDNVEAVINYDLPQDDESYVHRIGRTGRAGKSGKAFSFVAGRDLYKLRDIER
FTKAKIIRQNVPTYEDVAEVRTTLVLDQVKEVIQKGGLAKHVLKIERLVDQDFTTIDIAA
ALLKLVMKDTKAKEKSAEAGEAKGGPKPGFDRLFVTLGKKDRLHPKDLVDILTTHTSIPG
GKVGDIDLYDRFSFIEVPTDYTSEILERLAVTEINGMTVKFQKAEKKNMDPAEGGRELQE
LEDRPRKKFYDGPFNNNRGGGDRDRGGDRGPSRGGYGGDRDRGGDRGGRSYGGDRDRGGD
RGGRAFGGGDRGGRSFGGGDRDRGTSGGGGFRERKRRDF
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaattaaattccaggagcttccgttgtcggaagaaatccagcgtgctatcgtg
gacttaggctacgaagaggcttcccctatccaaactgccgccattcctgtcttattggaa
ggccgcgacgtaatcggacaagcccaaaccggtaccggcaaaactgccgcttttgcgatc
cctacaatagaaggtattgaccctaacaaccgcgaggtgcaggcgttgatcctttgccca
acgcgtgagttggccattcaggtatcagaagagattcagaaactagttaaatacaaaaaa
ggcatcagcgtagtgcctatctatggtggtcagccttatgagcgccaattacgcgcccta
aagcaaggggtacagatcgtgatcggaacacccggccgcgtaatggaccacattgaaaga
ggaactcttcgtctggaaaccactaaaaccatcattttagatgaggccgacgaaatgttg
gacatgggtttcagagaagacattgagtttgttctaactaaaatgcctgaagaccgccag
acggtattcttctcggctactatgagcaagcccatcatggagctgacgcgtaagtaccag
accaatcctgagattgtgaaggtaacccagcagcagctgaccgtgaacaacattgagcag
atctactttgaagtacgcagcggcggcaagatggaagtaaccactcgcctgattgacatg
tacaatttcaaagtggtgatcatcttctgtaataccaaacgcatggtagacgaactggtg
agcaacctacaggcccgcggctattttgctgatggtttgcacggtgaccttaaccagaac
cagcgtaccaacgtgatgaacaagttcaaagccggtaccctggagatcttagtagcgact
gacgttgctgcccgcggtattgacgtagacaacgtagaagcggtgatcaattatgacctt
ccgcaggacgatgaaagctacgtacaccgtattggccgtactggccgtgctggtaaatct
ggtaaagcattctctttcgtggctggacgtgacttgtacaaattgcgggatattgagcgc
ttcacaaaagcaaaaatcatccgtcagaacgtacctacttatgaagacgtagccgaagtt
cgtaccacgttggtattggatcaggtgaaagaagtcatccaaaaaggtggcctggccaag
cacgtgcttaaaattgagcgtttggtagaccaggatttcacaaccattgacattgcagcc
gctttgttgaaattggtgatgaaagacaccaaagccaaggagaaaagtgccgaggctggt
gaagccaaaggtggtcctaagccaggttttgaccgtttgttcgtgaccttaggcaagaaa
gaccgtctgcatccgaaagatctggttgatattcttaccacccacaccagcatccctggt
ggcaaagtaggagacattgacctgtatgaccggttcagcttcattgaagtgcctactgac
tatacctctgagattttagagcgcttggctgtaacagaaattaacggcatgaccgtgaag
ttccagaaagctgagaagaaaaacatggaccctgctgaaggtggtcgtgagttgcaggaa
ctggaagatcgtcctagaaagaaattctacgatggaccgttcaacaacaaccgtggcggt
ggcgacagagaccgtggtggagacagaggtcctagccgtggtggttacggtggagaccgt
gaccgtggcggtgacagaggaggccgttcttacggcggcgacagagaccgtggtggtgac
cgtggaggcagagcctttggtggtggcgaccgtggtggaagaagcttcggtggcggagat
cgtgaccgtggtaccagcggcggtggcggcttcagagaaagaaaaagaagagatttctaa
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