Rickettsia tillamookensis: H6P87_00193
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Entry
H6P87_00193 CDS
T07505
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rtl
Rickettsia tillamookensis
Pathway
rtl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rtl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H6P87_00193 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtl03021
]
H6P87_00193 (rpoC)
03400 DNA repair and recombination proteins [BR:
rtl03400
]
H6P87_00193 (rpoC)
Enzymes [BR:
rtl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H6P87_00193 (rpoC)
Transcription machinery [BR:
rtl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H6P87_00193 (rpoC)
DNA repair and recombination proteins [BR:
rtl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H6P87_00193 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QQV74656
LinkDB
All DBs
Position
204994..209112
Genome browser
AA seq
1372 aa
AA seq
DB search
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDVEKILYFENYVVIDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVIQQMLKELDFSKLKQELYEELQTTSSEVKKKKLVKRLKLVEDFLESENKPEWMIMD
VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKPEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA
RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTLAFDNEAGEGMMFSDLAEMEHALYNK
FITIHTKIKYRRNQLNAEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKFINKQLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLEIK
EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIATPPVSDDPNHQKINAIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEVIVPLAEKILGRTAAI
DIFHPVTNDLILSKGELINEAKLEQIESAGLDRIMIKSVLTCESTTGICSICYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVEASYDAKVKIISRNVV
INSEERKIVMSQNCELLLLDNNGNEKARHKIPYGARLLVDDSDMVIKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAKGEV
ITLSNGLEARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR
RPKDHAVIAEVDGRVEFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEITD
SGGTTLLAGEKIDRHEFEEINEKAIKNGLKPAEAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENV
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagtaaatttttacggacaattaagtaatactcaacaatttgatcaaataagg
attaatatagcaagtcctgatcaagtacgttcgtggtctttcggtgaagtaacaaaacct
gaaacaattaactatcgaacctttaaacctgagaaagacggtttattttgtgcaagaatt
tttggtccggtaaaagattacgaatgtctctgcggtaaatataagcggatgaaaaaccgt
ggtattacatgtgagaaatgcggcgtcgaagttacggtttctagagtaagacgtgaaaga
atggggcatattgaacttgcagctcccgttgctcatatttggtttttaaagtcattacct
tcaagaattagtacgcttcttgatatgacaatgcgagatgtagaaaagattctttatttt
gaaaattatgtagtaattgaccctgggttatcgattttacaaaaaggtgaacttttaaca
gaggaagaattacagaaagcaaaagataagtacggtgaagatgcgtttactgcctctata
ggtgcagaagtaatacagcaaatgcttaaagagcttgatttctcaaagttaaagcaagag
ttatacgaagagttgcaaactacttcttcagaagttaaaaagaaaaaactagtaaagcgt
ttaaaattagtagaggattttttagagtcggaaaacaagccagaatggatgattatggat
gttttgccggttattcctcctgaaattagaccgcttgttatgcttgacggcggaagattt
gctacttcggacttaaatgaactttatagaagagtaattaatagaaataatcgtttaaag
aaactaatagagtcaaaagctcctgatataatagtcaggaacgaaaaaagaatgttacaa
gaagcggtggatgcgttatttgataacggtcgtcgaggtagagcagcgaaaaatgctaat
aagcgtccatttaagtcattaagtgatatgcttaaaggtaagcagggtcgtttccgtcag
aacctacttggtaaaagggttgactattcaggacgttcggttatcgtggttgggcctgag
cttaagctccatcaatgtggtttacctaaaaaaatggcattggagctatttaagccgttt
atttattctaagcttgagttgtacggtattgctacgactattaaagccgcaaaaagaatg
gtggaagctgaaaagcctgaagtttgggatgtgcttgaagaagtcataagagagcatccg
gttttacttaatagagctccgacattgcatagattaggtattcaagcatttgaaccttta
ttaatcgaaggtaaagcgattcagcttcatccgcttgtttgtgctgcgtttaatgcagac
tttgacggtgatcagatggcggtacatatcccgttatcgattgaagcacagcttgaagct
agggtatttatgatgtctacaaataatatcttaagccctgcaaacggacgtcctattatt
gtaccggataaagatatagtacttggtttatattatctaacccttgcatttgataatgaa
gcaggcgaagggatgatgttctcagatttagcagagatggaacatgctttatataataaa
tttataactattcatacaaagataaaatatcgtagaaatcagctaaatgctgaaggtaaa
atggtccctgttatcattgatactacttacggtaggttaatggtcggtgaattattgcct
tctaaccctaatatagaattcaagtttattaataaacaactaactaaaaaagacatatca
ttagttatagatttagtttatcgtcactgcggtcaaaaagctacggtaatttttgccgat
cagctaatgaaactaggttttaaatatgcttgttcttcaggtatttcttttggaatggac
gatatggtagtaccggaatctaagagtactcatatcaatgaaactcagcttgaaataaaa
gaatttgaacaacaatattcaaacggtttaattacttatggagagaaatataataaagta
gttgatgcttggtcaagatgtaccgatagagtagcaaacgacatgatgaaagagattgct
acgccgccggttagcgatgatccgaatcatcagaaaataaatgctatatatatgatggct
atttccggagcaagaggttctttccagcaaattaagcagttaggcggtatgcgaggttta
atgaccaaatcaaacggtcaaattatacaaactcctattatctctaactttaaggaagga
ttaactgaatttgagtgttttaattctgctaacggaatgcgtaaagggcaaatagatact
gctttaaaaacggcaagctcaggttacttaacaagaaaattagtagacgttgcacaagat
tgtattattaccgaaaaagattgtggaactgataaaggaattgaagttaagagtgttatt
gaaggcggggaagttatagtacctttagctgaaaagattttaggtcgcactgctgctatc
gatatatttcatccggtaactaatgatctaattctcagtaaaggcgagcttattaatgaa
gcaaagttagagcagattgagtcggctggactcgatagaattatgataaaatccgtatta
acctgtgaaagtactaccggtatatgtagtatatgttacggtagggatcttgctaccggt
acgttggtgtcggagggtgaggcaatcggagttattgctgctcaatctatcggtgaacct
ggtacgcagcttacaatgagaactttccatatcggaggagcggcaacaaaaggtgctgag
gtttcttctgtagaagcttcctatgacgcaaaagtgaaaattataagccgtaacgttgtt
attaattccgaagaacgtaaaattgttatgagccaaaattgtgaattattattacttgat
aataacggtaatgaaaaggctcgtcataaaattccatacggtgctagattacttgttgat
gacagtgatatggttattaaaactcaaaaactagcggagtgggatccttatactataccg
attatcacggagaaatcaggtaaagttttattcaaagatatggttgagggtatttctatt
cgtgacgtaactgacgaagctactggaataccaagtaaagttattattgagtcaaaacaa
tattcacgtggggcagaattacgtcctcgtatacagcttttagatgctaaaggtgaagtt
ataaccttatcaaacggtttagaagctagatattacttgccggttggagcagttttaagt
gtagaagacggagtacaaatatctgtaggtgatattattgcacgtataccgaaagaatca
accactactaaagatattaccggtggtttaccgagagttgccgagcttgtagaagcaaga
cgtcctaaagatcacgcagttattgccgaggttgacggtagagtagaattcggtaaagac
tataaatctaagagacgtattattatacatccgattgatgaaacaatgtctattgagtat
atggtacctaaaggcaagcatgttgtagttaacgaaggtgactttgttaaaaaaggtgat
ttattgattgatggtaatccggtactccaagatattttaaaagtaatgggagtagaggtt
cttgcaaattatattgttaaagaggttcaagccgtttatcgtctacaaggtgtaaagatt
gatgataagcacatagaagttattattcgtcagatgttacaaaaagtagaaatcacggat
tcaggtggaactaccttattagcaggtgaaaaaatagatagacatgaattcgaggagata
aatgaaaaggctattaaaaatggtttaaaacctgctgaagcacaattaatattacaaggt
attactaaagcttctctgcaaactagatcatttatctctgcggcatcattccaggagact
actagagttttaactgaagcagctattgccggtaaggtagataaactacgaggactaaaa
gaaaacgtgatagttgggcgattagtacctgccggaaccggttactttatggataaaatg
cgtaaagcagctgtaaagcttgatgaagagaatgtataa
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