Rickettsia tillamookensis: H6P87_00471
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Entry
H6P87_00471 CDS
T07505
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rtl
Rickettsia tillamookensis
Brite
KEGG Orthology (KO) [BR:
rtl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtl03032
]
H6P87_00471 (topA)
03400 DNA repair and recombination proteins [BR:
rtl03400
]
H6P87_00471 (topA)
Enzymes [BR:
rtl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H6P87_00471 (topA)
DNA replication proteins [BR:
rtl03032
]
Prokaryotic type
DNA Topoisomerases
H6P87_00471 (topA)
DNA repair and recombination proteins [BR:
rtl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H6P87_00471 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Toprim_C_rpt
Zn_ribbon_Top1
POLR3C_WHD
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QQV74929
LinkDB
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Position
complement(506294..508624)
Genome browser
AA seq
776 aa
AA seq
DB search
MKLVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGK
YVDAIVKDAKKADAVYLATDPDREGESISWHVAEVIKEKNKVKSDDFFKRVAFNEITKKA
IIHAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICE
REDEIERFKSEEYWDISLKMQNSNNELFTAKLTHVNDQKLEKFSIIKEKDAKNLTEKLKS
QKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKETIG
LITYMRTDGVTLSNDAIADIRNLIDKNYGDKYLPTSPRIYKSKVKNAQEAHEAIRPTNIT
YTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVVASLASENKEYLAKANGSTIAF
DGFYKVYRESVDDEAEEENKMLPPLKEQEPLKTKEIIPNQHFTEPPPRYSEASLVKKLEE
LGIGRPSTYASILSVLQDRKYVSLEKKRFMPEELGRLVTVFLVGFFKKYVEYDFTAGLEN
ELDEIAAGKLEWKAALNNFWSGFNHNIESVNEQKITEIISYVQKALDYHLFGENKESKVC
PSCKTGELSLKLGKFGAFLACSNYPECTFRKSIVSGNDNNENEGEPSAIPNENKILGTDK
DGIEIHLKKGPYGSYIQLGEQEGKVKPKRSPVPPSLNQNDITLEMALKLLSLPLKIGVHK
DSDEEITIDYGKFGPYIKYIGKFISIPKKYDFLNLSLDDAMKLIEDNKAKLEKKQG
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaaattagtaatagtagaatcgccggcaaaggcaaaaacgataaataaatatttaggt
gatgaatttaaggtcattgcatcattcggtcatattagagatttaccttctaaaaaaggc
tcagtgttacctgatgaaaattttgcgatgaaatatgatatttccgataaagccggtaaa
tatgtagatgccatagttaaagatgctaaaaaagctgatgcagtatatcttgcaaccgat
ccggatcgtgagggtgaatctatctcatggcatgttgcagaggtaataaaagaaaagaat
aaagttaaatccgatgattttttcaaaagggtagcctttaatgaaattactaaaaaagca
attattcatgccgttgagaaccctagaaaacttgacactaacttagtaaatgcccagcaa
gcaagaagagctttagactatttagtcggctttaccctttcacctcttttatggcgtaag
ttacctgggtgtaaatcggcgggacgtgtacagtctgtggctctgcgattaatatgtgag
cgagaagatgaaatagagcgttttaagtcagaagaatattgggatattagccttaaaatg
caaaatagtaataacgaactatttactgctaaattgactcacgtaaacgatcaaaagtta
gaaaaattctcaattattaaggaaaaagatgccaaaaatttaactgagaaattaaaatct
caaaaatttcatgttgataagatagaaaagaaacaacaaaaacgtcagccacaacctcct
tttatcacttcatcactgcaacaagaagcagcaagaaaattaggttttagtgctaaaaag
actatgcaaatagcacaaaaactttatgagggcgttgacataggtaaggaaactataggg
cttattacctatatgagaaccgacggcgttacattatcaaatgacgcaatagctgatata
cgtaatttaatcgataaaaattacggcgacaaatatttaccgactagccctagaatttac
aaatccaaagtaaaaaatgctcaagaagctcatgaggcaataagacccacaaatatcact
tatacgcctgatagcttaaaagaaaagctagaaaaggattactataaactctatgaacta
atttggaaaaggactatagcctgccaaatggaaaatgtgataatggatttggtagttgca
agtttagcttcggaaaataaagaatatttggcaaaagcaaatggctcgactatagcattt
gacgggttttataaggtttatcgtgaaagtgtggacgatgaggctgaagaagaaaataaa
atgctgcctcctttaaaagaacaagaaccgcttaaaactaaagaaattattcctaatcag
cattttacagaacctcctccaagatattcggaagcaagcttagtgaaaaaacttgaagag
cttgggatcggtcgcccttcgacctatgctagtattttatcggttttacaagatcgtaaa
tacgtctctcttgagaaaaagcgttttatgcctgaagaattaggacgtttggtaacggta
ttcttggtcggttttttcaagaaatatgtagaatatgattttaccgcaggtcttgaaaat
gagttagacgaaatagcggcaggtaagcttgaatggaaagctgctttaaataatttttgg
agcggttttaatcataatattgaatcggtaaacgaacaaaaaataaccgagattattagc
tatgtacagaaagcccttgattatcacttgttcggtgagaataaagaatctaaagtttgt
ccttcatgtaaaacgggtgagcttagcttaaaactcggtaagttcggagcgtttttagca
tgtagtaattaccctgaatgtactttcagaaaatccattgttagcggtaacgataataac
gaaaatgaaggcgaaccttccgctattcctaatgagaataaaattttaggcactgataaa
gacgggatagaaatacacttaaaaaaaggaccttacggatcttatattcaacttggtgaa
caagaaggcaaagtaaagccgaaacgtagccccgtgcctcctagcttgaatcaaaacgat
atcacacttgagatggcattgaagcttctaagcttacctcttaaaatcggcgtgcataaa
gatagcgacgaggaaattacgatagattacggtaaattcggtccttacataaaatatata
ggaaagtttatttcaatacctaaaaaatatgattttctgaatttaagcttagacgacgca
atgaagctaattgaagacaataaggcgaagttagagaagaaacaggggtaa
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